Human SNP ID | rs4415084 |
---|---|
Human chromosome | chr5 |
Human SNP position | 44662413 |
Pig chromosome | chr16 |
Pig SNP position | 30530880 |
PubMed ID | 21263130 |
---|---|
Journal | J Natl Cancer Inst |
Link | www.ncbi.nlm.nih.gov/pubmed/21263130 |
Study | Novel breast cancer susceptibility locus at 9q31.2: results of a genome-wide association study. |
Disease/Trait | Breast cancer |
Initial sample | 2,839 European ancestry cases, 3,507 European ancestry controls |
Replication sample | 9,041 European ancestry cases, 8,980 European ancestry controls |
Region | 5p12 |
Chromosome id | chr5 |
Chromosome position | 44662413 |
Reported gene | intergenic |
Mapped gene | LOC102723839 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 102723839 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs4415084-T |
SNPs | rs4415084 |
Merged | 0 |
SNP id current | 4415084 |
Context | intergenic_variant |
Intergenic | 0 |
Allele frequency | 0.42 |
P value | 0.00000000008 |
Pvalue mlog | 10.096910013008 |
P value text | |
Or beta | 1.17 |
%95 Ci | [1.11-1.22] |
Platform | Illumina [~ 296114] |
CNV | N |
Mapped trait | breast carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000305 |
Study accession | GCST000952 |