Human SNP ID | rs4410790 |
---|---|
Human chromosome | chr7 |
Human SNP position | 17244953 |
Pig chromosome | chr9 |
Pig SNP position | 95346030 |
PubMed ID | 21490707 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21490707 |
Study | Genome-wide meta-analysis identifies regions on 7p21 (AHR) and 15q24 (CYP1A2) as determinants of habitual caffeine consumption. |
Disease/Trait | Caffeine consumption |
Initial sample | 47,431 European ancestry individuals |
Replication sample | NA |
Region | 7p21.1 |
Chromosome id | chr7 |
Chromosome position | 17244953 |
Reported gene | AHR |
Mapped gene | LOC105375170 - LOC101927609 |
Upstream gene id | 105375170 |
Downstream gene id | 101927609 |
SNP gene ids | |
Upstream gene distance | 223337 |
Downstream gene distance | 34991 |
SNP risk allele | rs4410790-T |
SNPs | rs4410790 |
Merged | 0 |
SNP id current | 4410790 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.38 |
P value | 2E-19 |
Pvalue mlog | 18.698970004336 |
P value text | |
Or beta | 0.15 |
%95 Ci | [0.11-0.19] mg/day decrease |
Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | coffee consumption |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004330 |
Study accession | GCST001032 |
PubMed ID | 25288136 |
Journal | Mol Psychiatry |
Link | www.ncbi.nlm.nih.gov/pubmed/25288136 |
Study | Genome-wide meta-analysis identifies six novel loci associated with habitual coffee consumption. |
Disease/Trait | Coffee consumption (cups per day) |
Initial sample | 91,462 European ancestry individuals |
Replication sample | 30,062 European ancestry individuals, 7,964 African American individuals |
Region | 7p21.1 |
Chromosome id | chr7 |
Chromosome position | 17244953 |
Reported gene | AHR |
Mapped gene | LOC105375170 - LOC101927609 |
Upstream gene id | 105375170 |
Downstream gene id | 101927609 |
SNP gene ids | |
Upstream gene distance | 223337 |
Downstream gene distance | 34991 |
SNP risk allele | rs4410790-T |
SNPs | rs4410790 |
Merged | 0 |
SNP id current | 4410790 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.37 |
P value | 0.00000000000000003 |
Pvalue mlog | 16.5228787452803 |
P value text | |
Or beta | 0.1 |
%95 Ci | [0.08-0.12] unit decrease |
Platform | Affymetrix, Illumina [2373958] (imputed) |
CNV | N |
Mapped trait | coffee consumption, cups of coffee per day measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004330, http://www.ebi.ac.uk/efo/EFO_0006782 |
Study accession | GCST002650 |