SNP Detail For rs4397868
1.Mapping Information
Human SNP ID rs4397868
Human chromosome chr11
Human SNP position 133697090
Pig chromosome chr9
Pig SNP position 66782122
2.Annotation Information
PubMed ID19448619
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/19448619
StudyLoci at chromosomes 13, 19 and 20 influence age at natural menopause.
Disease/TraitMenopause (age at onset)
Initial sample2,979 European ancestry female individuals
Replication sample2,560 European ancestry female individuals
Region11q25
Chromosome idchr11
Chromosome position133697090
Reported geneNR
Mapped geneOPCML - LOC646522
Upstream gene id4978
Downstream gene id646522
SNP gene ids
Upstream gene distance164582
Downstream gene distance86581
SNP risk allelers4397868-?
SNPsrs4397868
Merged0
SNP id current4397868
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.0000003
Pvalue mlog6.52287874528033
P value text
Or beta0.4
%95 Ci[0.25-0.55] years decrease
PlatformIllumina [315418]
CNVN
Mapped traitage at menopause
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004704
Study accessionGCST000401