Human SNP ID | rs4397868 |
---|---|
Human chromosome | chr11 |
Human SNP position | 133697090 |
Pig chromosome | chr9 |
Pig SNP position | 66782122 |
PubMed ID | 19448619 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/19448619 |
Study | Loci at chromosomes 13, 19 and 20 influence age at natural menopause. |
Disease/Trait | Menopause (age at onset) |
Initial sample | 2,979 European ancestry female individuals |
Replication sample | 2,560 European ancestry female individuals |
Region | 11q25 |
Chromosome id | chr11 |
Chromosome position | 133697090 |
Reported gene | NR |
Mapped gene | OPCML - LOC646522 |
Upstream gene id | 4978 |
Downstream gene id | 646522 |
SNP gene ids | |
Upstream gene distance | 164582 |
Downstream gene distance | 86581 |
SNP risk allele | rs4397868-? |
SNPs | rs4397868 |
Merged | 0 |
SNP id current | 4397868 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.0000003 |
Pvalue mlog | 6.52287874528033 |
P value text | |
Or beta | 0.4 |
%95 Ci | [0.25-0.55] years decrease |
Platform | Illumina [315418] |
CNV | N |
Mapped trait | age at menopause |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004704 |
Study accession | GCST000401 |