SNP Detail For rs4395360
1.Mapping Information
Human SNP ID rs4395360
Human chromosome chr3
Human SNP position 157600468
Pig chromosome chr13
Pig SNP position 105597377
2.Annotation Information
PubMed ID25673413
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/25673413
StudyGenetic studies of body mass index yield new insights for obesity biology.
Disease/TraitBody mass index
Initial sampleup to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals
Replication sampleup to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828
Region3q25.32
Chromosome idchr3
Chromosome position157600468
Reported geneC3orf55
Mapped genePQLC2L
Upstream gene id
Downstream gene id
SNP gene ids152078
Upstream gene distance
Downstream gene distance
SNP risk allelers4395360-C
SNPsrs4395360
Merged0
SNP id current4395360
Context3_prime_UTR_variant
Intergenic0
Allele frequency0.383
P value0.000004
Pvalue mlog5.39794000867203
P value text(EA)
Or beta0.017
%95 Ci[0.0099-0.0247] kg/m2 increase
PlatformAffymetrix, Illumina [2550021]
CNVN
Mapped traitbody mass index
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004340
Study accessionGCST002783
PubMed ID25673413
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/25673413
StudyGenetic studies of body mass index yield new insights for obesity biology.
Disease/TraitBody mass index
Initial sampleup to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals
Replication sampleup to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828
Region3q25.32
Chromosome idchr3
Chromosome position157600468
Reported geneC3orf55
Mapped genePQLC2L
Upstream gene id
Downstream gene id
SNP gene ids152078
Upstream gene distance
Downstream gene distance
SNP risk allelers4395360-C
SNPsrs4395360
Merged0
SNP id current4395360
Context3_prime_UTR_variant
Intergenic0
Allele frequency0.387
P value0.000004
Pvalue mlog5.39794000867203
P value text
Or beta0.016
%95 Ci[0.0093-0.0235] kg/m2 increase
PlatformAffymetrix, Illumina [2550021]
CNVN
Mapped traitbody mass index
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004340
Study accessionGCST002783