SNP Detail For rs4380028
1.Mapping Information
Human SNP ID rs4380028
Human chromosome chr15
Human SNP position 78818751
Pig chromosome chr7
Pig SNP position 53536237
2.Annotation Information
PubMed ID21378988
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21378988
StudyA genome-wide association study in Europeans and South Asians identifies five new loci for coronary artery disease.
Disease/TraitCoronary heart disease
Initial sample8,424 European ancestry cases, 7,268 European ancestry controls, 6,996 South Asian ancestry cases, 7,794 South Asian ancestry controls
Replication sample18,049 European ancestry cases, 16,357 European ancestry controls, 3,359 South Asian ancestry cases, 2,828 South Asian ancestry controls
Region15q25.1
Chromosome idchr15
Chromosome position78818751
Reported geneADAMTS7, MORF4L1
Mapped geneADAMTS7 - TRK-CTT1-2
Upstream gene id11173
Downstream gene id100189013
SNP gene ids
Upstream gene distance7287
Downstream gene distance41811
SNP risk allelers4380028-C
SNPsrs4380028
Merged0
SNP id current4380028
Contextintron_variant
Intergenic1
Allele frequency0.65
P value0.000000004
Pvalue mlog8.39794000867203
P value text
Or beta1.07
%95 Ci[1.05-1.10]
PlatformIllumina [574919]
CNVN
Mapped traitcoronary heart disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001645
Study accessionGCST000999