Human SNP ID | rs4374383 |
---|---|
Human chromosome | chr2 |
Human SNP position | 112013193 |
Pig chromosome | chr3 |
Pig SNP position | 46158466 |
PubMed ID | 22841784 |
---|---|
Journal | Gastroenterology |
Link | www.ncbi.nlm.nih.gov/pubmed/22841784 |
Study | Genome-wide association study identifies variants associated with progression of liver fibrosis from HCV infection. |
Disease/Trait | Hepatitis C induced liver fibrosis |
Initial sample | 1,161 European ancestry HCV-infected individuals |
Replication sample | 1,181 European ancestry HCV-infected individuals |
Region | 2q13 |
Chromosome id | chr2 |
Chromosome position | 112013193 |
Reported gene | MERTK |
Mapped gene | MERTK |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 10461 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs4374383-A |
SNPs | rs4374383 |
Merged | 0 |
SNP id current | 4374383 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.42 |
P value | 0.000000001 |
Pvalue mlog | 9 |
P value text | (Duration F0-1/F3-4, transfused) |
Or beta | |
%95 Ci | |
Platform | Illumina [780650] (imputed) |
CNV | N |
Mapped trait | hepatitis C infection, cirrhosis of liver |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003047, http://www.ebi.ac.uk/efo/EFO_0001422 |
Study accession | GCST001623 |