Human SNP ID | rs4348174 |
---|---|
Human chromosome | chr5 |
Human SNP position | 52195230 |
Pig chromosome | chr16 |
Pig SNP position | 33435843 |
PubMed ID | 25436638 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/25436638 |
Study | Genetic Variants Associated with Serum Thyroid Stimulating Hormone (TSH) Levels in European Americans and African Americans from the eMERGE Network. |
Disease/Trait | Serum thyroid-stimulating hormone levels |
Initial sample | 4,501 European ancestry individuals, 351 African American individuals |
Replication sample | NA |
Region | 5q11.2 |
Chromosome id | chr5 |
Chromosome position | 52195230 |
Reported gene | ITGA1 |
Mapped gene | LOC105378961 - LOC105378962 |
Upstream gene id | 105378961 |
Downstream gene id | 105378962 |
SNP gene ids | |
Upstream gene distance | 57648 |
Downstream gene distance | 93793 |
SNP risk allele | rs4348174-C |
SNPs | rs4348174 |
Merged | 0 |
SNP id current | 4348174 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.4 |
P value | 0.000004 |
Pvalue mlog | 5.39794000867203 |
P value text | (EA) |
Or beta | 0.05 |
%95 Ci | [0.03-0.07] unit increase |
Platform | Illumina [up to 905285] |
CNV | N |
Mapped trait | thyroid stimulating hormone measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004748 |
Study accession | GCST002707 |