SNP Detail For rs4348174
1.Mapping Information
Human SNP ID rs4348174
Human chromosome chr5
Human SNP position 52195230
Pig chromosome chr16
Pig SNP position 33435843
2.Annotation Information
PubMed ID25436638
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/25436638
StudyGenetic Variants Associated with Serum Thyroid Stimulating Hormone (TSH) Levels in European Americans and African Americans from the eMERGE Network.
Disease/TraitSerum thyroid-stimulating hormone levels
Initial sample4,501 European ancestry individuals, 351 African American individuals
Replication sampleNA
Region5q11.2
Chromosome idchr5
Chromosome position52195230
Reported geneITGA1
Mapped geneLOC105378961 - LOC105378962
Upstream gene id105378961
Downstream gene id105378962
SNP gene ids
Upstream gene distance57648
Downstream gene distance93793
SNP risk allelers4348174-C
SNPsrs4348174
Merged0
SNP id current4348174
Contextintergenic_variant
Intergenic1
Allele frequency0.4
P value0.000004
Pvalue mlog5.39794000867203
P value text(EA)
Or beta0.05
%95 Ci[0.03-0.07] unit increase
PlatformIllumina [up to 905285]
CNVN
Mapped traitthyroid stimulating hormone measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004748
Study accessionGCST002707