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SNP Detail For rs4345897
1.Mapping Information
| Human SNP ID | rs4345897 |
|---|---|
| Human chromosome | chr10 |
| Human SNP position | 98387303 |
| Pig chromosome | chr14 |
| Pig SNP position | 119119718 |
2.Annotation Information
| PubMed ID | 24586186 |
|---|---|
| Journal | PLoS Genet |
| Link | www.ncbi.nlm.nih.gov/pubmed/24586186 |
| Study | Genome-wide association study of metabolic traits reveals novel gene-metabolite-disease links. |
| Disease/Trait | Urinary metabolites (H-NMR features) |
| Initial sample | 835 European ancestry individuals |
| Replication sample | 601 Brazilian individuals |
| Region | 10q24.2 |
| Chromosome id | chr10 |
| Chromosome position | 98387303 |
| Reported gene | PYROXD2 |
| Mapped gene | PYROXD2 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 84795 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs4345897-A |
| SNPs | rs4345897 |
| Merged | 0 |
| SNP id current | 4345897 |
| Context | missense_variant |
| Intergenic | 0 |
| Allele frequency | 0.34 |
| P value | 2E-19 |
| Pvalue mlog | 18.698970004336 |
| P value text | (2.8825, Trimethylamine) |
| Or beta | 0.34 |
| %95 Ci | [NR] unit decrease |
| Platform | Illumina [713870] (imputed) |
| CNV | N |
| Mapped trait | urinary metabolite measurement |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005116 |
| Study accession | GCST002364 |
| PubMed ID | 24586186 |
| Journal | PLoS Genet |
| Link | www.ncbi.nlm.nih.gov/pubmed/24586186 |
| Study | Genome-wide association study of metabolic traits reveals novel gene-metabolite-disease links. |
| Disease/Trait | Urinary metabolites (H-NMR features) |
| Initial sample | 835 European ancestry individuals |
| Replication sample | 601 Brazilian individuals |
| Region | 10q24.2 |
| Chromosome id | chr10 |
| Chromosome position | 98387303 |
| Reported gene | PYROXD2 |
| Mapped gene | PYROXD2 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 84795 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs4345897-A |
| SNPs | rs4345897 |
| Merged | 0 |
| SNP id current | 4345897 |
| Context | missense_variant |
| Intergenic | 0 |
| Allele frequency | 0.34 |
| P value | 0.000000000004 |
| Pvalue mlog | 11.397940008672 |
| P value text | (1.7775, Unknown) |
| Or beta | 0.27 |
| %95 Ci | [NR] unit decrease |
| Platform | Illumina [713870] (imputed) |
| CNV | N |
| Mapped trait | urinary metabolite measurement |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005116 |
| Study accession | GCST002364 |
| PubMed ID | 23281178 |
| Journal | Hum Mutat |
| Link | www.ncbi.nlm.nih.gov/pubmed/23281178 |
| Study | A genome-wide assessment of variability in human serum metabolism. |
| Disease/Trait | Metabolite levels |
| Initial sample | 214 European ancestry prostate cancer cases, 188 European ancestry controls |
| Replication sample | 489 European ancestry prostate cancer cases |
| Region | 10q24.2 |
| Chromosome id | chr10 |
| Chromosome position | 98387303 |
| Reported gene | PYROXD2 |
| Mapped gene | PYROXD2 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 84795 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs4345897-G |
| SNPs | rs4345897 |
| Merged | 0 |
| SNP id current | 4345897 |
| Context | missense_variant |
| Intergenic | 0 |
| Allele frequency | NR |
| P value | 2E-91 |
| Pvalue mlog | 90.698970004336 |
| P value text | (Caprolactam) |
| Or beta | |
| %95 Ci | |
| Platform | Affymetrix [333722] |
| CNV | N |
| Mapped trait | metabolite measurement |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004725 |
| Study accession | GCST001882 |
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