SNP Detail For rs4333130
1.Mapping Information
Human SNP ID rs4333130
Human chromosome chr4
Human SNP position 80028675
Pig chromosome chr8
Pig SNP position 146920962
2.Annotation Information
PubMed ID20062062
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20062062
StudyGenome-wide association study of ankylosing spondylitis identifies non-MHC susceptibility loci.
Disease/TraitAnkylosing spondylitis
Initial sample2,053 European ancestry cases, 5,140 European ancestry controls
Replication sample898 European ancestry cases, 1,518 European ancestry controls
Region4q21.21
Chromosome idchr4
Chromosome position80028675
Reported geneANTXR2
Mapped geneANTXR2
Upstream gene id
Downstream gene id
SNP gene ids118429
Upstream gene distance
Downstream gene distance
SNP risk allelers4333130-?
SNPsrs4333130
Merged0
SNP id current4333130
Contextintron_variant
Intergenic0
Allele frequency0.64
P value0.00000009
Pvalue mlog7.04575749056067
P value text
Or beta1.22
%95 Ci[1.12-1.32]
PlatformIllumina [288662]
CNVN
Mapped traitankylosing spondylitis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003898
Study accessionGCST000563