Human SNP ID | rs4333130 |
---|---|
Human chromosome | chr4 |
Human SNP position | 80028675 |
Pig chromosome | chr8 |
Pig SNP position | 146920962 |
PubMed ID | 20062062 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/20062062 |
Study | Genome-wide association study of ankylosing spondylitis identifies non-MHC susceptibility loci. |
Disease/Trait | Ankylosing spondylitis |
Initial sample | 2,053 European ancestry cases, 5,140 European ancestry controls |
Replication sample | 898 European ancestry cases, 1,518 European ancestry controls |
Region | 4q21.21 |
Chromosome id | chr4 |
Chromosome position | 80028675 |
Reported gene | ANTXR2 |
Mapped gene | ANTXR2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 118429 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs4333130-? |
SNPs | rs4333130 |
Merged | 0 |
SNP id current | 4333130 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.64 |
P value | 0.00000009 |
Pvalue mlog | 7.04575749056067 |
P value text | |
Or beta | 1.22 |
%95 Ci | [1.12-1.32] |
Platform | Illumina [288662] |
CNV | N |
Mapped trait | ankylosing spondylitis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003898 |
Study accession | GCST000563 |