Human SNP ID | rs4331426 |
---|---|
Human chromosome | chr18 |
Human SNP position | 22610832 |
Pig chromosome | chr6 |
Pig SNP position | 100217853 |
PubMed ID | 20694014 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/20694014 |
Study | Genome-wide association analyses identifies a susceptibility locus for tuberculosis on chromosome 18q11.2. |
Disease/Trait | Tuberculosis |
Initial sample | 2,237 Sub-Saharan African ancestry cases, 3,122 Sub-Saharan African ancestry controls |
Replication sample | 1,462 Sub-Saharan African ancestry cases, 4,604 Sub-Saharan African ancestry controls |
Region | 18q11.2 |
Chromosome id | chr18 |
Chromosome position | 22610832 |
Reported gene | RBBP8, CABLES1, GATA6, CTAGE1 |
Mapped gene | LOC105372021 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 105372021 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs4331426-G |
SNPs | rs4331426 |
Merged | 0 |
SNP id current | 4331426 |
Context | intergenic_variant |
Intergenic | 0 |
Allele frequency | 0.48 |
P value | 0.000000007 |
Pvalue mlog | 8.15490195998574 |
P value text | |
Or beta | 1.19 |
%95 Ci | [1.10-1.30] |
Platform | Affymetrix [> 333754] (imputed) |
CNV | N |
Mapped trait | Tuberculosis |
Mapped trait URI | http://www.orpha.net/ORDO/Orphanet_3389 |
Study accession | GCST000764 |
PubMed ID | 24057671 |
Journal | Hum Mol Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/24057671 |
Study | Genome-wide association study of ancestry-specific TB risk in the South African Coloured population. |
Disease/Trait | Tuberculosis |
Initial sample | 642 South African coloured cases, 91 South African coloured controls, (see Thye 2010) |
Replication sample | NA |
Region | 18q11.2 |
Chromosome id | chr18 |
Chromosome position | 22610832 |
Reported gene | NR |
Mapped gene | LOC105372021 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 105372021 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs4331426-? |
SNPs | rs4331426 |
Merged | 0 |
SNP id current | 4331426 |
Context | intergenic_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.00000002 |
Pvalue mlog | 7.69897000433601 |
P value text | (binary model) |
Or beta | |
%95 Ci | |
Platform | Affymetrix [1009364] (imputed) |
CNV | N |
Mapped trait | Tuberculosis |
Mapped trait URI | http://www.orpha.net/ORDO/Orphanet_3389 |
Study accession | GCST002197 |