Human SNP ID | rs4321864 |
---|---|
Human chromosome | chr6 |
Human SNP position | 32431410 |
Pig chromosome | chr7 |
Pig SNP position | 29029833 |
PubMed ID | 26450422 |
---|---|
Journal | J Infect Dis |
Link | www.ncbi.nlm.nih.gov/pubmed/26450422 |
Study | Polymorphisms In HLA Class II Genes Are Associated With Susceptibility To Staphylococcus aureus Infection In A Caucasian Population. |
Disease/Trait | Staphylococcus aureus infection |
Initial sample | 4,701 European ancestry cases, 45,344 European ancestry controls |
Replication sample | NA |
Region | 6p21.32 |
Chromosome id | chr6 |
Chromosome position | 32431410 |
Reported gene | HLA-DRA |
Mapped gene | BTNL2 - HLA-DRA |
Upstream gene id | 56244 |
Downstream gene id | 3122 |
SNP gene ids | |
Upstream gene distance | 22531 |
Downstream gene distance | 8432 |
SNP risk allele | rs4321864-A |
SNPs | rs4321864 |
Merged | |
SNP id current | 4321864 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.00000009 |
Pvalue mlog | 7.04575749056067 |
P value text | |
Or beta | 1.13 |
%95 Ci | [NR] |
Platform | Affymetrix [at least 584535] (imputed) |
CNV | N |
Mapped trait | Staphylococcus aureus infection |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005681 |
Study accession | GCST003150 |