SNP Detail For rs4321864
1.Mapping Information
Human SNP ID rs4321864
Human chromosome chr6
Human SNP position 32431410
Pig chromosome chr7
Pig SNP position 29029833
2.Annotation Information
PubMed ID26450422
JournalJ Infect Dis
Linkwww.ncbi.nlm.nih.gov/pubmed/26450422
StudyPolymorphisms In HLA Class II Genes Are Associated With Susceptibility To Staphylococcus aureus Infection In A Caucasian Population.
Disease/TraitStaphylococcus aureus infection
Initial sample4,701 European ancestry cases, 45,344 European ancestry controls
Replication sampleNA
Region6p21.32
Chromosome idchr6
Chromosome position32431410
Reported geneHLA-DRA
Mapped geneBTNL2 - HLA-DRA
Upstream gene id56244
Downstream gene id3122
SNP gene ids
Upstream gene distance22531
Downstream gene distance8432
SNP risk allelers4321864-A
SNPsrs4321864
Merged
SNP id current4321864
Contextintron_variant
Intergenic1
Allele frequencyNR
P value0.00000009
Pvalue mlog7.04575749056067
P value text
Or beta1.13
%95 Ci[NR]
PlatformAffymetrix [at least 584535] (imputed)
CNVN
Mapped traitStaphylococcus aureus infection
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005681
Study accessionGCST003150