SNP Detail For rs4313034
1.Mapping Information
Human SNP ID rs4313034
Human chromosome chr6
Human SNP position 30006148
Pig chromosome chr7
Pig SNP position 24661151
2.Annotation Information
PubMed ID21900946
JournalJ Hum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21900946
StudyIdentification of independent risk loci for Graves__ disease within the MHC in the Japanese population.
Disease/TraitGraves__ disease
Initial sample1,119 Japanese ancestry cases, 2,718 Japanese ancestry controls
Replication sample432 Japanese ancestry cases, 1,157 Japanese ancestry controls
Region6p22.1
Chromosome idchr6
Chromosome position30006148
Reported geneMHC
Mapped geneZNRD1-AS1, HLA-J
Upstream gene id
Downstream gene id
SNP gene ids80862, 3137
Upstream gene distance
Downstream gene distance
SNP risk allelers4313034-T
SNPsrs4313034
Merged0
SNP id current4313034
Contextnon_coding_transcript_exon_variant
Intergenic0
Allele frequency0.83
P value0.000000000000002
Pvalue mlog14.698970004336
P value text
Or beta1.67
%95 Ci[1.47-1.90]
PlatformPerlegen [268068]
CNVN
Mapped traitGraves disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004237
Study accessionGCST001219