Human SNP ID | rs4313034 |
---|---|
Human chromosome | chr6 |
Human SNP position | 30006148 |
Pig chromosome | chr7 |
Pig SNP position | 24661151 |
PubMed ID | 21900946 |
---|---|
Journal | J Hum Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21900946 |
Study | Identification of independent risk loci for Graves__ disease within the MHC in the Japanese population. |
Disease/Trait | Graves__ disease |
Initial sample | 1,119 Japanese ancestry cases, 2,718 Japanese ancestry controls |
Replication sample | 432 Japanese ancestry cases, 1,157 Japanese ancestry controls |
Region | 6p22.1 |
Chromosome id | chr6 |
Chromosome position | 30006148 |
Reported gene | MHC |
Mapped gene | ZNRD1-AS1, HLA-J |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 80862, 3137 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs4313034-T |
SNPs | rs4313034 |
Merged | 0 |
SNP id current | 4313034 |
Context | non_coding_transcript_exon_variant |
Intergenic | 0 |
Allele frequency | 0.83 |
P value | 0.000000000000002 |
Pvalue mlog | 14.698970004336 |
P value text | |
Or beta | 1.67 |
%95 Ci | [1.47-1.90] |
Platform | Perlegen [268068] |
CNV | N |
Mapped trait | Graves disease |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004237 |
Study accession | GCST001219 |