SNP Detail For rs4307059
1.Mapping Information
Human SNP ID rs4307059
Human chromosome chr5
Human SNP position 25967594
Pig chromosome chr1
Pig SNP position 200805311
2.Annotation Information
PubMed ID19404256
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/19404256
StudyCommon genetic variants on 5p14.1 associate with autism spectrum disorders.
Disease/TraitAutism
Initial sample3,101 European ancestry individuals from 780 families, 1,204 European ancestry cases, 6,491 European ancestry controls
Replication sample1,390 European ancestry individuals from 447 families, 108 European ancestry cases, 540 European ancestry controls
Region5p14.1
Chromosome idchr5
Chromosome position25967594
Reported geneCDH10, CDH9
Mapped geneMSNP1 - CDH9
Upstream gene id4479
Downstream gene id1007
SNP gene ids
Upstream gene distance54316
Downstream gene distance913006
SNP risk allelers4307059-T
SNPsrs4307059
Merged0
SNP id current4307059
Contextintergenic_variant
Intergenic1
Allele frequency0.61
P value0.0000000002
Pvalue mlog9.69897000433601
P value text
Or beta1.19
%95 Ci[NR]
PlatformIllumina [474019]
CNVN
Mapped traitautism
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003758
Study accessionGCST000382