SNP Detail For rs4298948
1.Mapping Information
Human SNP ID rs4298948
Human chromosome chr12
Human SNP position 121838349
Pig chromosome chr14
Pig SNP position 32663452
2.Annotation Information
PubMed ID23251661
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/23251661
StudyNovel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
Disease/TraitObesity-related traits
Initial sample815 Hispanic children from 263 families
Replication sampleNA
Region12q24.31
Chromosome idchr12
Chromosome position121838349
Reported geneHPD
Mapped geneSETD1B - HPD
Upstream gene id23067
Downstream gene id3242
SNP gene ids
Upstream gene distance5693
Downstream gene distance1178
SNP risk allelers4298948-G
SNPsrs4298948
Merged0
SNP id current4298948
Contextdownstream_gene_variant
Intergenic1
Allele frequency0.025
P value0.000003
Pvalue mlog5.52287874528033
P value text(Vigorous activity )
Or beta0.04
%95 Ci[NR] %awake time increase
PlatformIllumina [899892]
CNVN
Mapped traitphysical activity
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003940
Study accessionGCST001762