Human SNP ID | rs4297946 |
---|---|
Human chromosome | chr20 |
Human SNP position | 41182635 |
Pig chromosome | chr17 |
Pig SNP position | 49245697 |
PubMed ID | 20686565 |
---|---|
Journal | Nature |
Link | www.ncbi.nlm.nih.gov/pubmed/20686565 |
Study | Biological, clinical and population relevance of 95 loci for blood lipids. |
Disease/Trait | Cholesterol, total |
Initial sample | 100,184 European ancestry individuals |
Replication sample | NA |
Region | 20q12 |
Chromosome id | chr20 |
Chromosome position | 41182635 |
Reported gene | TOP1 |
Mapped gene | ZHX3 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 23051 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs4297946-C |
SNPs | rs4297946 |
Merged | 0 |
SNP id current | 4297946 |
Context | 3_prime_UTR_variant |
Intergenic | 0 |
Allele frequency | 0.47 |
P value | 0.00000000000000003 |
Pvalue mlog | 16.5228787452803 |
P value text | |
Or beta | 1.52 |
%95 Ci | [1.15-1.89] mg/dL increase |
Platform | Affymetrix, Illumina, Perlegen [~ 2600000] (imputed) |
CNV | N |
Mapped trait | total cholesterol measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004574 |
Study accession | GCST000760 |