SNP Detail For rs4297946
1.Mapping Information
Human SNP ID rs4297946
Human chromosome chr20
Human SNP position 41182635
Pig chromosome chr17
Pig SNP position 49245697
2.Annotation Information
PubMed ID20686565
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/20686565
StudyBiological, clinical and population relevance of 95 loci for blood lipids.
Disease/TraitCholesterol, total
Initial sample100,184 European ancestry individuals
Replication sampleNA
Region20q12
Chromosome idchr20
Chromosome position41182635
Reported geneTOP1
Mapped geneZHX3
Upstream gene id
Downstream gene id
SNP gene ids23051
Upstream gene distance
Downstream gene distance
SNP risk allelers4297946-C
SNPsrs4297946
Merged0
SNP id current4297946
Context3_prime_UTR_variant
Intergenic0
Allele frequency0.47
P value0.00000000000000003
Pvalue mlog16.5228787452803
P value text
Or beta1.52
%95 Ci[1.15-1.89] mg/dL increase
PlatformAffymetrix, Illumina, Perlegen [~ 2600000] (imputed)
CNVN
Mapped traittotal cholesterol measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004574
Study accessionGCST000760