Human SNP ID | rs4295627 |
---|---|
Human chromosome | chr8 |
Human SNP position | 129673211 |
Pig chromosome | chr4 |
Pig SNP position | 11026142 |
PubMed ID | 19578367 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/19578367 |
Study | Genome-wide association study identifies five susceptibility loci for glioma. |
Disease/Trait | Glioma |
Initial sample | 1,878 European ancestry cases, 3,670 European ancestry controls |
Replication sample | 2,545 European ancestry cases, 2,953 European ancestry controls |
Region | 8q24.21 |
Chromosome id | chr8 |
Chromosome position | 129673211 |
Reported gene | CCDC26 |
Mapped gene | CCDC26 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 137196 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs4295627-G |
SNPs | rs4295627 |
Merged | 0 |
SNP id current | 4295627 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.83 |
P value | 0.000000000000000002 |
Pvalue mlog | 17.698970004336 |
P value text | |
Or beta | 1.36 |
%95 Ci | [1.29-1.43] |
Platform | Illumina [454576] |
CNV | N |
Mapped trait | central nervous system cancer |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000326 |
Study accession | GCST000439 |
PubMed ID | 21531791 |
Journal | Hum Mol Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21531791 |
Study | Chromosome 7p11.2 (EGFR) variation influences glioma risk. |
Disease/Trait | Glioma |
Initial sample | 4,147 European ancestry cases, 7,435 European ancestry controls |
Replication sample | NA |
Region | 8q24.21 |
Chromosome id | chr8 |
Chromosome position | 129673211 |
Reported gene | CCDC26 |
Mapped gene | CCDC26 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 137196 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs4295627-? |
SNPs | rs4295627 |
Merged | 0 |
SNP id current | 4295627 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 5E-21 |
Pvalue mlog | 20.3010299956639 |
P value text | |
Or beta | 1.4 |
%95 Ci | [NR] |
Platform | Illumina [424460] |
CNV | N |
Mapped trait | central nervous system cancer |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000326 |
Study accession | GCST001058 |