SNP Detail For rs4295627
1.Mapping Information
Human SNP ID rs4295627
Human chromosome chr8
Human SNP position 129673211
Pig chromosome chr4
Pig SNP position 11026142
2.Annotation Information
PubMed ID19578367
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/19578367
StudyGenome-wide association study identifies five susceptibility loci for glioma.
Disease/TraitGlioma
Initial sample1,878 European ancestry cases, 3,670 European ancestry controls
Replication sample2,545 European ancestry cases, 2,953 European ancestry controls
Region8q24.21
Chromosome idchr8
Chromosome position129673211
Reported geneCCDC26
Mapped geneCCDC26
Upstream gene id
Downstream gene id
SNP gene ids137196
Upstream gene distance
Downstream gene distance
SNP risk allelers4295627-G
SNPsrs4295627
Merged0
SNP id current4295627
Contextintron_variant
Intergenic0
Allele frequency0.83
P value0.000000000000000002
Pvalue mlog17.698970004336
P value text
Or beta1.36
%95 Ci[1.29-1.43]
PlatformIllumina [454576]
CNVN
Mapped traitcentral nervous system cancer
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000326
Study accessionGCST000439
PubMed ID21531791
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21531791
StudyChromosome 7p11.2 (EGFR) variation influences glioma risk.
Disease/TraitGlioma
Initial sample4,147 European ancestry cases, 7,435 European ancestry controls
Replication sampleNA
Region8q24.21
Chromosome idchr8
Chromosome position129673211
Reported geneCCDC26
Mapped geneCCDC26
Upstream gene id
Downstream gene id
SNP gene ids137196
Upstream gene distance
Downstream gene distance
SNP risk allelers4295627-?
SNPsrs4295627
Merged0
SNP id current4295627
Contextintron_variant
Intergenic0
Allele frequencyNR
P value5E-21
Pvalue mlog20.3010299956639
P value text
Or beta1.4
%95 Ci[NR]
PlatformIllumina [424460]
CNVN
Mapped traitcentral nervous system cancer
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000326
Study accessionGCST001058