SNP Detail For rs4293393
1.Mapping Information
Human SNP ID rs4293393
Human chromosome chr16
Human SNP position 20353266
Pig chromosome chr3
Pig SNP position 26206308
2.Annotation Information
PubMed ID20686651
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20686651
StudyAssociation of variants at UMOD with chronic kidney disease and kidney stones-role of age and comorbid diseases.
Disease/TraitChronic kidney disease and serum creatinine levels
Initial sample1,689 European ancestry cases, 37,076 European ancestry controls
Replication sample1,972 European ancestry cases, 6,125 European ancestry controls
Region16p12.3
Chromosome idchr16
Chromosome position20353266
Reported geneUMOD
Mapped geneUMOD
Upstream gene id
Downstream gene id
SNP gene ids7369
Upstream gene distance
Downstream gene distance
SNP risk allelers4293393-T
SNPsrs4293393
Merged0
SNP id current4293393
Contextintron_variant
Intergenic0
Allele frequency0.798
P value0.0000000004
Pvalue mlog9.39794000867203
P value text(CKD)
Or beta1.25
%95 Ci[1.17-1.35]
PlatformIllumina [~ 2500000] (imputed)
CNVN
Mapped traitchronic kidney disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003884
Study accessionGCST000742