Human SNP ID | rs4293393 |
---|---|
Human chromosome | chr16 |
Human SNP position | 20353266 |
Pig chromosome | chr3 |
Pig SNP position | 26206308 |
PubMed ID | 20686651 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/20686651 |
Study | Association of variants at UMOD with chronic kidney disease and kidney stones-role of age and comorbid diseases. |
Disease/Trait | Chronic kidney disease and serum creatinine levels |
Initial sample | 1,689 European ancestry cases, 37,076 European ancestry controls |
Replication sample | 1,972 European ancestry cases, 6,125 European ancestry controls |
Region | 16p12.3 |
Chromosome id | chr16 |
Chromosome position | 20353266 |
Reported gene | UMOD |
Mapped gene | UMOD |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 7369 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs4293393-T |
SNPs | rs4293393 |
Merged | 0 |
SNP id current | 4293393 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.798 |
P value | 0.0000000004 |
Pvalue mlog | 9.39794000867203 |
P value text | (CKD) |
Or beta | 1.25 |
%95 Ci | [1.17-1.35] |
Platform | Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | chronic kidney disease |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003884 |
Study accession | GCST000742 |