SNP Detail For rs4263839
1.Mapping Information
Human SNP ID rs4263839
Human chromosome chr9
Human SNP position 114804160
Pig chromosome chr1
Pig SNP position 286459419
2.Annotation Information
PubMed ID18587394
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/18587394
StudyGenome-wide association defines more than 30 distinct susceptibility loci for Crohn__s disease.
Disease/TraitCrohn__s disease
Initial sample3,230 European ancestry cases, 4,829 European ancestry controls
Replication sample1,339 European ancestry trios, 2,325 European ancestry cases, 1,809 European ancestry controls
Region9q32
Chromosome idchr9
Chromosome position114804160
Reported geneTNFSF15
Mapped geneTNFSF15
Upstream gene id
Downstream gene id
SNP gene ids9966
Upstream gene distance
Downstream gene distance
SNP risk allelers4263839-G
SNPsrs4263839
Merged0
SNP id current4263839
Contextintron_variant
Intergenic0
Allele frequency0.68
P value0.0000000003
Pvalue mlog9.52287874528033
P value text
Or beta1.22
%95 Ci[NR]
PlatformAffymetrix, Illumina [635547] (imputed)
CNVN
Mapped traitCrohn__s disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000384
Study accessionGCST000207