Human SNP ID | rs4263839 |
---|---|
Human chromosome | chr9 |
Human SNP position | 114804160 |
Pig chromosome | chr1 |
Pig SNP position | 286459419 |
PubMed ID | 18587394 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/18587394 |
Study | Genome-wide association defines more than 30 distinct susceptibility loci for Crohn__s disease. |
Disease/Trait | Crohn__s disease |
Initial sample | 3,230 European ancestry cases, 4,829 European ancestry controls |
Replication sample | 1,339 European ancestry trios, 2,325 European ancestry cases, 1,809 European ancestry controls |
Region | 9q32 |
Chromosome id | chr9 |
Chromosome position | 114804160 |
Reported gene | TNFSF15 |
Mapped gene | TNFSF15 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 9966 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs4263839-G |
SNPs | rs4263839 |
Merged | 0 |
SNP id current | 4263839 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.68 |
P value | 0.0000000003 |
Pvalue mlog | 9.52287874528033 |
P value text | |
Or beta | 1.22 |
%95 Ci | [NR] |
Platform | Affymetrix, Illumina [635547] (imputed) |
CNV | N |
Mapped trait | Crohn__s disease |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000384 |
Study accession | GCST000207 |