Human SNP ID | rs42490 |
---|---|
Human chromosome | chr8 |
Human SNP position | 89766285 |
Pig chromosome | chr4 |
Pig SNP position | 51530271 |
PubMed ID | 20018961 |
---|---|
Journal | N Engl J Med |
Link | www.ncbi.nlm.nih.gov/pubmed/20018961 |
Study | Genomewide association study of leprosy. |
Disease/Trait | Leprosy |
Initial sample | 706 Han Chinese ancestry cases, 1,225 Han Chinese ancestry controls |
Replication sample | 3,254 Chinese ancestry cases, 5,955 Chinese ancestry controls |
Region | 8q21.3 |
Chromosome id | chr8 |
Chromosome position | 89766285 |
Reported gene | RIPK2 |
Mapped gene | RIPK2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 8767 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs42490-G |
SNPs | rs42490 |
Merged | 0 |
SNP id current | 42490 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.58 |
P value | 0.0000000000000001 |
Pvalue mlog | 16 |
P value text | |
Or beta | 1.32 |
%95 Ci | [1.23-1.41] |
Platform | Illumina [491883] |
CNV | N |
Mapped trait | leprosy |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001054 |
Study accession | GCST000546 |