SNP Detail For rs42490
1.Mapping Information
Human SNP ID rs42490
Human chromosome chr8
Human SNP position 89766285
Pig chromosome chr4
Pig SNP position 51530271
2.Annotation Information
PubMed ID20018961
JournalN Engl J Med
Linkwww.ncbi.nlm.nih.gov/pubmed/20018961
StudyGenomewide association study of leprosy.
Disease/TraitLeprosy
Initial sample706 Han Chinese ancestry cases, 1,225 Han Chinese ancestry controls
Replication sample3,254 Chinese ancestry cases, 5,955 Chinese ancestry controls
Region8q21.3
Chromosome idchr8
Chromosome position89766285
Reported geneRIPK2
Mapped geneRIPK2
Upstream gene id
Downstream gene id
SNP gene ids8767
Upstream gene distance
Downstream gene distance
SNP risk allelers42490-G
SNPsrs42490
Merged0
SNP id current42490
Contextintron_variant
Intergenic0
Allele frequency0.58
P value0.0000000000000001
Pvalue mlog16
P value text
Or beta1.32
%95 Ci[1.23-1.41]
PlatformIllumina [491883]
CNVN
Mapped traitleprosy
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001054
Study accessionGCST000546