SNP Detail For rs4246949
1.Mapping Information
Human SNP ID rs4246949
Human chromosome chr10
Human SNP position 123757564
Pig chromosome chr14
Pig SNP position 144891512
2.Annotation Information
PubMed ID25082827
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25082827
StudyA genome-wide association study identifies a novel locus at 6q22.1 associated with ulcerative colitis.
Disease/TraitUlcerative colitis
Initial sampleup to 7,483 European ancestry cases, up to 21,211 European ancestry controls
Replication sample1,073 European ancestry cases, 1,279 European ancestry controls
Region10q26.13
Chromosome idchr10
Chromosome position123757564
Reported geneCPXM2
Mapped geneCPXM2
Upstream gene id
Downstream gene id
SNP gene ids119587
Upstream gene distance
Downstream gene distance
SNP risk allelers4246949-?
SNPsrs4246949
Merged0
SNP id current4246949
Contextintron_variant
Intergenic0
Allele frequency0.77
P value0.000007
Pvalue mlog5.15490195998574
P value text(Southern European)
Or beta1.22
%95 Ci[1.05-1.41]
PlatformIllumina [546271]
CNVN
Mapped traitulcerative colitis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000729
Study accessionGCST002548