Human SNP ID | rs4246949 |
---|---|
Human chromosome | chr10 |
Human SNP position | 123757564 |
Pig chromosome | chr14 |
Pig SNP position | 144891512 |
PubMed ID | 25082827 |
---|---|
Journal | Hum Mol Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25082827 |
Study | A genome-wide association study identifies a novel locus at 6q22.1 associated with ulcerative colitis. |
Disease/Trait | Ulcerative colitis |
Initial sample | up to 7,483 European ancestry cases, up to 21,211 European ancestry controls |
Replication sample | 1,073 European ancestry cases, 1,279 European ancestry controls |
Region | 10q26.13 |
Chromosome id | chr10 |
Chromosome position | 123757564 |
Reported gene | CPXM2 |
Mapped gene | CPXM2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 119587 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs4246949-? |
SNPs | rs4246949 |
Merged | 0 |
SNP id current | 4246949 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.77 |
P value | 0.000007 |
Pvalue mlog | 5.15490195998574 |
P value text | (Southern European) |
Or beta | 1.22 |
%95 Ci | [1.05-1.41] |
Platform | Illumina [546271] |
CNV | N |
Mapped trait | ulcerative colitis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000729 |
Study accession | GCST002548 |