Human SNP ID | rs4245116 |
---|---|
Human chromosome | chr11 |
Human SNP position | 133386666 |
Pig chromosome | chr9 |
Pig SNP position | 66492642 |
PubMed ID | 25288136 |
---|---|
Journal | Mol Psychiatry |
Link | www.ncbi.nlm.nih.gov/pubmed/25288136 |
Study | Genome-wide meta-analysis identifies six novel loci associated with habitual coffee consumption. |
Disease/Trait | Coffee consumption (cups per day) |
Initial sample | 91,462 European ancestry individuals |
Replication sample | 30,062 European ancestry individuals, 7,964 African American individuals |
Region | 11q25 |
Chromosome id | chr11 |
Chromosome position | 133386666 |
Reported gene | NR |
Mapped gene | OPCML |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 4978 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs4245116-T |
SNPs | rs4245116 |
Merged | 0 |
SNP id current | 4245116 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | |
Or beta | 0.03 |
%95 Ci | [0.010-0.050] unit increase |
Platform | Affymetrix, Illumina [2373958] (imputed) |
CNV | N |
Mapped trait | coffee consumption, cups of coffee per day measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004330, http://www.ebi.ac.uk/efo/EFO_0006782 |
Study accession | GCST002650 |