SNP Detail For rs4245116
1.Mapping Information
Human SNP ID rs4245116
Human chromosome chr11
Human SNP position 133386666
Pig chromosome chr9
Pig SNP position 66492642
2.Annotation Information
PubMed ID25288136
JournalMol Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/25288136
StudyGenome-wide meta-analysis identifies six novel loci associated with habitual coffee consumption.
Disease/TraitCoffee consumption (cups per day)
Initial sample91,462 European ancestry individuals
Replication sample30,062 European ancestry individuals, 7,964 African American individuals
Region11q25
Chromosome idchr11
Chromosome position133386666
Reported geneNR
Mapped geneOPCML
Upstream gene id
Downstream gene id
SNP gene ids4978
Upstream gene distance
Downstream gene distance
SNP risk allelers4245116-T
SNPsrs4245116
Merged0
SNP id current4245116
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta0.03
%95 Ci[0.010-0.050] unit increase
PlatformAffymetrix, Illumina [2373958] (imputed)
CNVN
Mapped traitcoffee consumption, cups of coffee per day measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004330, http://www.ebi.ac.uk/efo/EFO_0006782
Study accessionGCST002650