SNP Detail For rs4238010
1.Mapping Information
Human SNP ID rs4238010
Human chromosome chr12
Human SNP position 4009151
Pig chromosome chr5
Pig SNP position 68642390
2.Annotation Information
PubMed ID19107115
JournalMol Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/19107115
StudyGenome-wide association study of recurrent major depressive disorder in two European case-control cohorts.
Disease/TraitMajor depressive disorder
Initial sample1,359 European ancestry cases, 1,782 European ancestry controls
Replication sampleNA
Region12p13.32
Chromosome idchr12
Chromosome position4009151
Reported geneCCND2
Mapped geneLOC105369610 - LOC105369611
Upstream gene id105369610
Downstream gene id105369611
SNP gene ids
Upstream gene distance43437
Downstream gene distance3876
SNP risk allelers4238010-G
SNPsrs4238010
Merged0
SNP id current4238010
Contextintergenic_variant
Intergenic1
Allele frequency0.02
P value0.000006
Pvalue mlog5.22184874961635
P value text
Or beta1.72
%95 Ci
PlatformAffymetrix, Illumina [494678] (imputed)
CNVN
Mapped traitunipolar depression
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003761
Study accessionGCST000304