Human SNP ID | rs421490 |
---|---|
Human chromosome | chr1 |
Human SNP position | 8215224 |
Pig chromosome | chr6 |
Pig SNP position | 63218234 |
PubMed ID | 24823311 |
---|---|
Journal | Circ Cardiovasc Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/24823311 |
Study | Genome-wide association study of plasma N6 polyunsaturated fatty acids within the cohorts for heart and aging research in genomic epidemiology consortium. |
Disease/Trait | Plasma omega-6 polyunsaturated fatty acid levels (gamma-linolenic acid) |
Initial sample | 8,631 European ancestry individuals |
Replication sample | NA |
Region | 1p36.23 |
Chromosome id | chr1 |
Chromosome position | 8215224 |
Reported gene | SLC45A1 |
Mapped gene | LOC102724539 - LOC105376695 |
Upstream gene id | 102724539 |
Downstream gene id | 105376695 |
SNP gene ids | |
Upstream gene distance | 14 |
Downstream gene distance | 24866 |
SNP risk allele | rs421490-A |
SNPs | rs421490 |
Merged | 0 |
SNP id current | 421490 |
Context | downstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.882 |
P value | 0.000003 |
Pvalue mlog | 5.52287874528033 |
P value text | |
Or beta | 0.01 |
%95 Ci | [NR] unit increase |
Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | omega-6 polyunsaturated fatty acid measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005680 |
Study accession | GCST002450 |