SNP Detail For rs421490
1.Mapping Information
Human SNP ID rs421490
Human chromosome chr1
Human SNP position 8215224
Pig chromosome chr6
Pig SNP position 63218234
2.Annotation Information
PubMed ID24823311
JournalCirc Cardiovasc Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24823311
StudyGenome-wide association study of plasma N6 polyunsaturated fatty acids within the cohorts for heart and aging research in genomic epidemiology consortium.
Disease/TraitPlasma omega-6 polyunsaturated fatty acid levels (gamma-linolenic acid)
Initial sample8,631 European ancestry individuals
Replication sampleNA
Region1p36.23
Chromosome idchr1
Chromosome position8215224
Reported geneSLC45A1
Mapped geneLOC102724539 - LOC105376695
Upstream gene id102724539
Downstream gene id105376695
SNP gene ids
Upstream gene distance14
Downstream gene distance24866
SNP risk allelers421490-A
SNPsrs421490
Merged0
SNP id current421490
Contextdownstream_gene_variant
Intergenic1
Allele frequency0.882
P value0.000003
Pvalue mlog5.52287874528033
P value text
Or beta0.01
%95 Ci[NR] unit increase
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traitomega-6 polyunsaturated fatty acid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005680
Study accessionGCST002450