SNP Detail For rs42041
1.Mapping Information
Human SNP ID rs42041
Human chromosome chr7
Human SNP position 92617430
Pig chromosome chr9
Pig SNP position 79254237
2.Annotation Information
PubMed ID18794853
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/18794853
StudyCommon variants at CD40 and other loci confer risk of rheumatoid arthritis.
Disease/TraitRheumatoid arthritis
Initial sample3,393 European ancestry cases, 12,460 European ancestry controls
Replication sample3,929 European ancestry cases, 5,807 European ancestry controls
Region7q21.2
Chromosome idchr7
Chromosome position92617430
Reported geneCDK6
Mapped geneCDK6
Upstream gene id
Downstream gene id
SNP gene ids1021
Upstream gene distance
Downstream gene distance
SNP risk allelers42041-G
SNPsrs42041
Merged0
SNP id current42041
Contextintron_variant
Intergenic0
Allele frequency0.24
P value0.000004
Pvalue mlog5.39794000867203
P value text
Or beta1.11
%95 Ci[NR]
PlatformAffymetrix, Illumina [at least 315971] (imputed)
CNVN
Mapped traitrheumatoid arthritis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000685
Study accessionGCST000232