Human SNP ID | rs42041 |
---|---|
Human chromosome | chr7 |
Human SNP position | 92617430 |
Pig chromosome | chr9 |
Pig SNP position | 79254237 |
PubMed ID | 18794853 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/18794853 |
Study | Common variants at CD40 and other loci confer risk of rheumatoid arthritis. |
Disease/Trait | Rheumatoid arthritis |
Initial sample | 3,393 European ancestry cases, 12,460 European ancestry controls |
Replication sample | 3,929 European ancestry cases, 5,807 European ancestry controls |
Region | 7q21.2 |
Chromosome id | chr7 |
Chromosome position | 92617430 |
Reported gene | CDK6 |
Mapped gene | CDK6 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 1021 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs42041-G |
SNPs | rs42041 |
Merged | 0 |
SNP id current | 42041 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.24 |
P value | 0.000004 |
Pvalue mlog | 5.39794000867203 |
P value text | |
Or beta | 1.11 |
%95 Ci | [NR] |
Platform | Affymetrix, Illumina [at least 315971] (imputed) |
CNV | N |
Mapped trait | rheumatoid arthritis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000685 |
Study accession | GCST000232 |