SNP Detail For rs417096
1.Mapping Information
Human SNP ID rs417096
Human chromosome chr6
Human SNP position 39760057
Pig chromosome chr7
Pig SNP position 40249057
2.Annotation Information
PubMed ID25108383
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25108383
StudyGenome-wide association analyses identify variants in developmental genes associated with hypospadias.
Disease/TraitHypospadias
Initial sample1,006 European ancestry male child cases, 2,390 European ancestry male child controls, 3,096 European ancestry female child controls
Replication sample1,972 European ancestry male child cases, 1,401 European ancestry male child controls, 405 European ancestry female child controls, 6 European ancestry child controls
Region6p21.2
Chromosome idchr6
Chromosome position39760057
Reported geneDAAM2
Mapped geneKIF6 - DAAM2
Upstream gene id221458
Downstream gene id23500
SNP gene ids
Upstream gene distance34585
Downstream gene distance32309
SNP risk allelers417096-G
SNPsrs417096
Merged0
SNP id current417096
Contextintergenic_variant
Intergenic1
Allele frequency0.356
P value7E-25
Pvalue mlog24.1549019599857
P value text
Or beta1.43
%95 Ci[NR]
PlatformIllumina [8207076] (imputed)
CNVN
Mapped traithypospadias
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004209
Study accessionGCST002563