Human SNP ID | rs416603 |
---|---|
Human chromosome | chr16 |
Human SNP position | 11270222 |
Pig chromosome | chr3 |
Pig SNP position | 32658824 |
PubMed ID | 18978792 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/18978792 |
Study | Meta-analysis of genome-wide association study data identifies additional type 1 diabetes risk loci. |
Disease/Trait | Type 1 diabetes |
Initial sample | 3,561 European ancestry cases, 4,646 European ancestry controls |
Replication sample | 6,225 European ancestry cases, 6,946 European ancestry controls, 3,064 European ancestry trios from 2,828 families |
Region | 16p13.13 |
Chromosome id | chr16 |
Chromosome position | 11270222 |
Reported gene | TNP2, PRM3, C16orf75 |
Mapped gene | LOC105371082 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 105371082 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs416603-T |
SNPs | rs416603 |
Merged | 0 |
SNP id current | 416603 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.44 |
P value | 0.000003 |
Pvalue mlog | 5.52287874528033 |
P value text | |
Or beta | 1.06 |
%95 Ci | [1.01-1.12] |
Platform | Affymetrix [up to 335565] |
CNV | N |
Mapped trait | type I diabetes mellitus |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001359 |
Study accession | GCST000258 |