SNP Detail For rs416603
1.Mapping Information
Human SNP ID rs416603
Human chromosome chr16
Human SNP position 11270222
Pig chromosome chr3
Pig SNP position 32658824
2.Annotation Information
PubMed ID18978792
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/18978792
StudyMeta-analysis of genome-wide association study data identifies additional type 1 diabetes risk loci.
Disease/TraitType 1 diabetes
Initial sample3,561 European ancestry cases, 4,646 European ancestry controls
Replication sample6,225 European ancestry cases, 6,946 European ancestry controls, 3,064 European ancestry trios from 2,828 families
Region16p13.13
Chromosome idchr16
Chromosome position11270222
Reported geneTNP2, PRM3, C16orf75
Mapped geneLOC105371082
Upstream gene id
Downstream gene id
SNP gene ids105371082
Upstream gene distance
Downstream gene distance
SNP risk allelers416603-T
SNPsrs416603
Merged0
SNP id current416603
Contextintron_variant
Intergenic0
Allele frequency0.44
P value0.000003
Pvalue mlog5.52287874528033
P value text
Or beta1.06
%95 Ci[1.01-1.12]
PlatformAffymetrix [up to 335565]
CNVN
Mapped traittype I diabetes mellitus
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001359
Study accessionGCST000258