Human SNP ID | rs4148325 |
---|---|
Human chromosome | chr2 |
Human SNP position | 233764663 |
Pig chromosome | chr15 |
Pig SNP position | 148155772 |
PubMed ID | 21646302 |
---|---|
Journal | Mayo Clin Proc |
Link | www.ncbi.nlm.nih.gov/pubmed/21646302 |
Study | Mayo Genome Consortia: a genotype-phenotype resource for genome-wide association studies with an application to the analysis of circulating bilirubin levels. |
Disease/Trait | Bilirubin levels |
Initial sample | 6,307 European ancestry individuals |
Replication sample | NA |
Region | 2q37.1 |
Chromosome id | chr2 |
Chromosome position | 233764663 |
Reported gene | UGT1A |
Mapped gene | UGT1A3, UGT1A4, UGT1A1, UGT1A5, UGT1A7, UGT1A9, UGT1A8, UGT1A10, UGT1A6 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 54659, 54657, 54658, 54579, 54577, 54600, 54576, 54575, 54578 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs4148325-? |
SNPs | rs4148325 |
Merged | 0 |
SNP id current | 4148325 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.33 |
P value | 5E-62 |
Pvalue mlog | 61.3010299956639 |
P value text | |
Or beta | 0.17 |
%95 Ci | [0.15-0.19] mg/dL increase |
Platform | Illumina [583129] |
CNV | N |
Mapped trait | bilirubin measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004570 |
Study accession | GCST001091 |
PubMed ID | 25884002 |
Journal | Open Forum Infect Dis |
Link | www.ncbi.nlm.nih.gov/pubmed/25884002 |
Study | Phenome-wide Association Study Relating Pretreatment Laboratory Parameters With Human Genetic Variants in AIDS Clinical Trials Group Protocols. |
Disease/Trait | Total bilirubin levels in HIV-1 infection |
Initial sample | 2,547 individuals |
Replication sample | NA |
Region | 2q37.1 |
Chromosome id | chr2 |
Chromosome position | 233764663 |
Reported gene | UGT1A7, UGT1A, UGT1A9, UGT1A5, UGT1A10, UGT1A3, UGT1A1, UGT1A8, UGT1A6, UGT1A4, LOC100286922, MROH2A |
Mapped gene | UGT1A3, UGT1A4, UGT1A1, UGT1A5, UGT1A7, UGT1A9, UGT1A8, UGT1A10, UGT1A6 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 54659, 54657, 54658, 54579, 54577, 54600, 54576, 54575, 54578 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs4148325-? |
SNPs | rs4148325 |
Merged | 0 |
SNP id current | 4148325 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.3654 |
P value | 1E-30 |
Pvalue mlog | 30 |
P value text | rs4148324, rs3771341 |
Or beta | 0.113883175 |
%95 Ci | [NR] unit increase |
Platform | Illumina [5954294] (imputed) |
CNV | N |
Mapped trait | HIV-1 infection, bilirubin measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000180, http://www.ebi.ac.uk/efo/EFO_0004570 |
Study accession | GCST002745 |
PubMed ID | 25246029 |
Journal | Acta Diabetol |
Link | www.ncbi.nlm.nih.gov/pubmed/25246029 |
Study | Genome-wide analysis of hepatic lipid content in extreme obesity. |
Disease/Trait | Bilirubin levels in extreme obesity |
Initial sample | 1,868 European ancestry cases |
Replication sample | NA |
Region | 2q37.1 |
Chromosome id | chr2 |
Chromosome position | 233764663 |
Reported gene | UGT1A1 |
Mapped gene | UGT1A3, UGT1A4, UGT1A1, UGT1A5, UGT1A7, UGT1A9, UGT1A8, UGT1A10, UGT1A6 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 54659, 54657, 54658, 54579, 54577, 54600, 54576, 54575, 54578 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs4148325-? |
SNPs | rs4148325 |
Merged | 0 |
SNP id current | 4148325 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 5E-93 |
Pvalue mlog | 92.3010299956639 |
P value text | |
Or beta | |
%95 Ci | |
Platform | Illumina [605718] |
CNV | N |
Mapped trait | bilirubin measurement, obesity |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004570, http://www.ebi.ac.uk/efo/EFO_0001073 |
Study accession | GCST002628 |