SNP Detail For rs4142995
1.Mapping Information
Human SNP ID rs4142995
Human chromosome chr7
Human SNP position 17879635
Pig chromosome chr9
Pig SNP position 96057580
2.Annotation Information
PubMed ID24097068
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24097068
StudyDiscovery and refinement of loci associated with lipid levels.
Disease/TraitHDL cholesterol
Initial sample94,595 European ancestry individuals
Replication sample93,982 European ancestry individuals
Region7p21.1
Chromosome idchr7
Chromosome position17879635
Reported geneSNX13
Mapped geneSNX13
Upstream gene id
Downstream gene id
SNP gene ids23161
Upstream gene distance
Downstream gene distance
SNP risk allelers4142995-T
SNPsrs4142995
Merged0
SNP id current4142995
Context3_prime_UTR_variant
Intergenic0
Allele frequency0.38
P value0.000000000009
Pvalue mlog11.0457574905606
P value text
Or beta0.026
%95 Ci[NR] unit decrease
PlatformNR [NR] (imputed)
CNVN
Mapped traithigh density lipoprotein cholesterol measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004612
Study accessionGCST002223