SNP Detail For rs4142110
1.Mapping Information
Human SNP ID rs4142110
Human chromosome chr13
Human SNP position 42180386
Pig chromosome chr11
Pig SNP position 25538270
2.Annotation Information
PubMed ID22396660
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22396660
StudyA genome-wide association study of nephrolithiasis in the Japanese population identifies novel susceptible Loci at 5q35.3, 7p14.3, and 13q14.1.
Disease/TraitNephrolithiasis
Initial sample904 Japanese ancestry cases, 7,471 Japanese ancestry controls
Replication sample4,892 Japanese ancestry cases, 9,873 Japanese ancestry controls
Region13q14.11
Chromosome idchr13
Chromosome position42180386
Reported geneDGKH
Mapped geneDGKH
Upstream gene id
Downstream gene id
SNP gene ids160851
Upstream gene distance
Downstream gene distance
SNP risk allelers4142110-?
SNPsrs4142110
Merged0
SNP id current4142110
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000000005
Pvalue mlog8.30102999566398
P value text
Or beta1.14
%95 Ci[1.09-1.19]
PlatformIllumina [556249]
CNVN
Mapped traitnephrolithiasis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004253
Study accessionGCST001432