Human SNP ID | rs4142110 |
---|---|
Human chromosome | chr13 |
Human SNP position | 42180386 |
Pig chromosome | chr11 |
Pig SNP position | 25538270 |
PubMed ID | 22396660 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22396660 |
Study | A genome-wide association study of nephrolithiasis in the Japanese population identifies novel susceptible Loci at 5q35.3, 7p14.3, and 13q14.1. |
Disease/Trait | Nephrolithiasis |
Initial sample | 904 Japanese ancestry cases, 7,471 Japanese ancestry controls |
Replication sample | 4,892 Japanese ancestry cases, 9,873 Japanese ancestry controls |
Region | 13q14.11 |
Chromosome id | chr13 |
Chromosome position | 42180386 |
Reported gene | DGKH |
Mapped gene | DGKH |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 160851 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs4142110-? |
SNPs | rs4142110 |
Merged | 0 |
SNP id current | 4142110 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.000000005 |
Pvalue mlog | 8.30102999566398 |
P value text | |
Or beta | 1.14 |
%95 Ci | [1.09-1.19] |
Platform | Illumina [556249] |
CNV | N |
Mapped trait | nephrolithiasis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004253 |
Study accession | GCST001432 |