SNP Detail For rs4142041
1.Mapping Information
Human SNP ID rs4142041
Human chromosome chr10
Human SNP position 66881193
Pig chromosome chr14
Pig SNP position 76029636
2.Annotation Information
PubMed ID17158188
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/17158188
StudyNovel genes identified in a high-density genome wide association study for nicotine dependence.
Disease/TraitNicotine dependence
Initial sample482 European ancestry cases, 466 European ancestry controls
Replication sample568 European ancestry cases, 413 European ancestry controls
Region10q21.3
Chromosome idchr10
Chromosome position66881193
Reported geneCTNNA3
Mapped geneCTNNA3
Upstream gene id
Downstream gene id
SNP gene ids29119
Upstream gene distance
Downstream gene distance
SNP risk allelers4142041-G
SNPsrs4142041
Merged0
SNP id current4142041
Contextintron_variant
Intergenic0
Allele frequency0.34
P value0.000006
Pvalue mlog5.22184874961635
P value text
Or beta1.14
%95 Ci[0.97-1.35]
PlatformPerlegen [2400000]
CNVN
Mapped traitnicotine dependence
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003768
Study accessionGCST000010