Human SNP ID | rs4142041 |
---|---|
Human chromosome | chr10 |
Human SNP position | 66881193 |
Pig chromosome | chr14 |
Pig SNP position | 76029636 |
PubMed ID | 17158188 |
---|---|
Journal | Hum Mol Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/17158188 |
Study | Novel genes identified in a high-density genome wide association study for nicotine dependence. |
Disease/Trait | Nicotine dependence |
Initial sample | 482 European ancestry cases, 466 European ancestry controls |
Replication sample | 568 European ancestry cases, 413 European ancestry controls |
Region | 10q21.3 |
Chromosome id | chr10 |
Chromosome position | 66881193 |
Reported gene | CTNNA3 |
Mapped gene | CTNNA3 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 29119 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs4142041-G |
SNPs | rs4142041 |
Merged | 0 |
SNP id current | 4142041 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.34 |
P value | 0.000006 |
Pvalue mlog | 5.22184874961635 |
P value text | |
Or beta | 1.14 |
%95 Ci | [0.97-1.35] |
Platform | Perlegen [2400000] |
CNV | N |
Mapped trait | nicotine dependence |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003768 |
Study accession | GCST000010 |