SNP Detail For rs4141819
1.Mapping Information
Human SNP ID rs4141819
Human chromosome chr2
Human SNP position 67637543
Pig chromosome chr3
Pig SNP position 78050366
2.Annotation Information
PubMed ID23104006
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23104006
StudyGenome-wide association meta-analysis identifies new endometriosis risk loci.
Disease/TraitEndometriosis
Initial sample3,181 European ancestry cases, 8,075 European ancestry controls, 1,423 Japanese ancestry cases, 1,318 Japanese ancestry controls
Replication sample1,044 Japanese ancestry, 4,017 Japanese ancestry controls
Region2p14
Chromosome idchr2
Chromosome position67637543
Reported geneNR
Mapped geneLOC102724373 - LOC101927701
Upstream gene id102724373
Downstream gene id101927701
SNP gene ids
Upstream gene distance38776
Downstream gene distance158511
SNP risk allelers4141819-C
SNPsrs4141819
Merged0
SNP id current4141819
Contextintron_variant
Intergenic1
Allele frequency0.309
P value0.00000009
Pvalue mlog7.04575749056067
P value text
Or beta1.15
%95 Ci[1.09-1.21]
PlatformIllumina [407632]
CNVN
Mapped traitendometriosis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001065
Study accessionGCST001720