SNP Detail For rs41279633
1.Mapping Information
Human SNP ID rs41279633
Human chromosome chr7
Human SNP position 44541277
Pig chromosome chr18
Pig SNP position 55630362
2.Annotation Information
PubMed ID25961943
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25961943
StudyThe impact of low-frequency and rare variants on lipid levels.
Disease/TraitLDL cholesterol
Initial sampleup 62,166 European ancestry individuals
Replication sampleNA
Region7p13
Chromosome idchr7
Chromosome position44541277
Reported geneNPC1L1
Mapped geneNPC1L1
Upstream gene id
Downstream gene id
SNP gene ids29881
Upstream gene distance
Downstream gene distance
SNP risk allelers41279633-T
SNPsrs41279633
Merged
SNP id current41279633
Context5_prime_UTR_variant
Intergenic0
Allele frequency0.18
P value0.0000000001
Pvalue mlog10
P value text
Or beta0.054
%95 Ci[0.038-0.07] s.d. increase
PlatformAffymetrix, Illumina, Perlegen [up to 9657952] (imputed)
CNVN
Mapped traitlow density lipoprotein cholesterol measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004611
Study accessionGCST002898