Human SNP ID | rs4105144 |
---|---|
Human chromosome | chr19 |
Human SNP position | 40852719 |
Pig chromosome | chr6 |
Pig SNP position | 44869871 |
PubMed ID | 20418888 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/20418888 |
Study | Sequence variants at CHRNB3-CHRNA6 and CYP2A6 affect smoking behavior. |
Disease/Trait | Smoking behavior |
Initial sample | 31,266 European ancestry individuals |
Replication sample | 54,731 European ancestry individuals |
Region | 19q13.2 |
Chromosome id | chr19 |
Chromosome position | 40852719 |
Reported gene | CYP2A6, RAB4D |
Mapped gene | CYP2A6 - CYP2A7 |
Upstream gene id | 1548 |
Downstream gene id | 1549 |
SNP gene ids | |
Upstream gene distance | 2272 |
Downstream gene distance | 22720 |
SNP risk allele | rs4105144-C |
SNPs | rs4105144 |
Merged | 0 |
SNP id current | 4105144 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | 0.7 |
P value | 0.000000000002 |
Pvalue mlog | 11.698970004336 |
P value text | |
Or beta | 0.39 |
%95 Ci | [0.27-0.51] CPD increase |
Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | smoking behavior |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004318 |
Study accession | GCST000667 |