SNP Detail For rs4105144
1.Mapping Information
Human SNP ID rs4105144
Human chromosome chr19
Human SNP position 40852719
Pig chromosome chr6
Pig SNP position 44869871
2.Annotation Information
PubMed ID20418888
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20418888
StudySequence variants at CHRNB3-CHRNA6 and CYP2A6 affect smoking behavior.
Disease/TraitSmoking behavior
Initial sample31,266 European ancestry individuals
Replication sample54,731 European ancestry individuals
Region19q13.2
Chromosome idchr19
Chromosome position40852719
Reported geneCYP2A6, RAB4D
Mapped geneCYP2A6 - CYP2A7
Upstream gene id1548
Downstream gene id1549
SNP gene ids
Upstream gene distance2272
Downstream gene distance22720
SNP risk allelers4105144-C
SNPsrs4105144
Merged0
SNP id current4105144
Contextintron_variant
Intergenic1
Allele frequency0.7
P value0.000000000002
Pvalue mlog11.698970004336
P value text
Or beta0.39
%95 Ci[0.27-0.51] CPD increase
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traitsmoking behavior
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004318
Study accessionGCST000667