SNP Detail For rs409224
1.Mapping Information
Human SNP ID rs409224
Human chromosome chr7
Human SNP position 102221930
Pig chromosome chr3
Pig SNP position 9417631
2.Annotation Information
PubMed ID26584805
JournalGenes Nutr
Linkwww.ncbi.nlm.nih.gov/pubmed/26584805
StudyA genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.
Disease/TraitPlasma omega-3 polyunsaturated fatty acid level (eicosapentaenoic acid)
Initial sample717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls
Replication sampleNA
Region7q22.1
Chromosome idchr7
Chromosome position102221930
Reported geneNR
Mapped geneCUX1
Upstream gene id
Downstream gene id
SNP gene ids1523
Upstream gene distance
Downstream gene distance
SNP risk allelers409224-C
SNPsrs409224
Merged
SNP id current409224
Contextintron_variant
Intergenic0
Allele frequency0.0645
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta0.1748
%95 Ci[0.1-0.25] unit decrease
PlatformIllumina [up to 1980188] (imputed)
CNVN
Mapped trait
Mapped trait URI
Study accessionGCST003241
PubMed ID26584805
JournalGenes Nutr
Linkwww.ncbi.nlm.nih.gov/pubmed/26584805
StudyA genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.
Disease/TraitPlasma omega-3 polyunsaturated fatty acid levels (docosahexaenoic acid)
Initial sample717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls
Replication sampleNA
Region7q22.1
Chromosome idchr7
Chromosome position102221930
Reported geneNR
Mapped geneCUX1
Upstream gene id
Downstream gene id
SNP gene ids1523
Upstream gene distance
Downstream gene distance
SNP risk allelers409224-C
SNPsrs409224
Merged
SNP id current409224
Contextintron_variant
Intergenic0
Allele frequency0.0645
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta0.202
%95 Ciunit decrease
PlatformIllumina [up to 1980188] (imputed)
CNVN
Mapped trait
Mapped trait URI
Study accessionGCST003240