SNP Detail For rs4078252
1.Mapping Information
Human SNP ID rs4078252
Human chromosome chr5
Human SNP position 113119770
Pig chromosome chr2
Pig SNP position 121270317
2.Annotation Information
PubMed ID24483146
JournalBMC Genomics
Linkwww.ncbi.nlm.nih.gov/pubmed/24483146
StudyDiscovery of genetic biomarkers contributing to variation in drug response of cytidine analogues using human lymphoblastoid cell lines.
Disease/TraitResponse to cytadine analogues (cytosine arabinoside)
Initial sample60 European ancestry lymphoblastoid cell lines, 54 African American lymphoblastoid cell lines, 60 Han Chinese ancestry lymphoblastoid cell lines
Replication sampleNA
Region5q22.2
Chromosome idchr5
Chromosome position113119770
Reported geneNR
Mapped geneMCC
Upstream gene id
Downstream gene id
SNP gene ids4163
Upstream gene distance
Downstream gene distance
SNP risk allelers4078252-?
SNPsrs4078252
Merged0
SNP id current4078252
Contextintron_variant
Intergenic0
Allele frequency
P value0.0000002
Pvalue mlog6.69897000433601
P value text
Or beta
%95 Ci
PlatformAffymetrix, Illumina [1348798]
CNVN
Mapped traitresponse to cytosine arabinoside
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005655
Study accessionGCST002345