Human SNP ID | rs4078252 |
---|---|
Human chromosome | chr5 |
Human SNP position | 113119770 |
Pig chromosome | chr2 |
Pig SNP position | 121270317 |
PubMed ID | 24483146 |
---|---|
Journal | BMC Genomics |
Link | www.ncbi.nlm.nih.gov/pubmed/24483146 |
Study | Discovery of genetic biomarkers contributing to variation in drug response of cytidine analogues using human lymphoblastoid cell lines. |
Disease/Trait | Response to cytadine analogues (cytosine arabinoside) |
Initial sample | 60 European ancestry lymphoblastoid cell lines, 54 African American lymphoblastoid cell lines, 60 Han Chinese ancestry lymphoblastoid cell lines |
Replication sample | NA |
Region | 5q22.2 |
Chromosome id | chr5 |
Chromosome position | 113119770 |
Reported gene | NR |
Mapped gene | MCC |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 4163 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs4078252-? |
SNPs | rs4078252 |
Merged | 0 |
SNP id current | 4078252 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | |
P value | 0.0000002 |
Pvalue mlog | 6.69897000433601 |
P value text | |
Or beta | |
%95 Ci | |
Platform | Affymetrix, Illumina [1348798] |
CNV | N |
Mapped trait | response to cytosine arabinoside |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005655 |
Study accession | GCST002345 |