SNP Detail For rs4074793
1.Mapping Information
Human SNP ID rs4074793
Human chromosome chr5
Human SNP position 52897294
Pig chromosome chr16
Pig SNP position 34057875
2.Annotation Information
PubMed ID22001757
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22001757
StudyGenome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.
Disease/TraitLiver enzyme levels (gamma-glutamyl transferase)
Initial sampleUp to 52,350 European ancestry individuals, up to 8,739 Indian Asian ancestry individuals
Replication sampleNA
Region5q11.2
Chromosome idchr5
Chromosome position52897294
Reported geneITGA1
Mapped geneITGA1
Upstream gene id
Downstream gene id
SNP gene ids3672
Upstream gene distance
Downstream gene distance
SNP risk allelers4074793-G
SNPsrs4074793
Merged0
SNP id current4074793
Contextintron_variant
Intergenic0
Allele frequency0.07
P value0.0000000003
Pvalue mlog9.52287874528033
P value text
Or beta5.5
%95 Ci[3.30-7.70] % increase
PlatformAffymetrix, Illumina, Perlegen [~ 2600000] (imputed)
CNVN
Mapped traitserum gamma-glutamyl transferase measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004532
Study accessionGCST001277