SNP Detail For rs4072910
1.Mapping Information
Human SNP ID rs4072910
Human chromosome chr19
Human SNP position 8579147
Pig chromosome chr2
Pig SNP position 71118588
2.Annotation Information
PubMed ID20881960
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/20881960
StudyHundreds of variants clustered in genomic loci and biological pathways affect human height.
Disease/TraitHeight
Initial sample133,653 European ancestry individuals
Replication sample50,074 European ancestry individuals
Region19p13.2
Chromosome idchr19
Chromosome position8579147
Reported geneADAMTS10
Mapped geneMYO1F - ADAMTS10
Upstream gene id4542
Downstream gene id81794
SNP gene ids
Upstream gene distance1700
Downstream gene distance1093
SNP risk allelers4072910-C
SNPsrs4072910
Merged0
SNP id current4072910
Contextupstream_gene_variant
Intergenic1
Allele frequency0.46
P value0.0000000000004
Pvalue mlog12.397940008672
P value text
Or beta0.031
%95 Ci[NR] unit decrease
PlatformAffymetrix, Illumina [2834208] (imputed)
CNVN
Mapped traitbody height
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004339
Study accessionGCST000817
PubMed ID25282103
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25282103
StudyDefining the role of common variation in the genomic and biological architecture of adult human height.
Disease/TraitHeight
Initial sample253,288 European ancestry individuals
Replication sample80,067 European ancestry individuals
Region19p13.2
Chromosome idchr19
Chromosome position8579147
Reported geneADAMTS10
Mapped geneMYO1F - ADAMTS10
Upstream gene id4542
Downstream gene id81794
SNP gene ids
Upstream gene distance1700
Downstream gene distance1093
SNP risk allelers4072910-C
SNPsrs4072910
Merged0
SNP id current4072910
Contextupstream_gene_variant
Intergenic1
Allele frequency0.442
P value0.000000000000000001
Pvalue mlog18
P value text
Or beta0.032
%95 Ci[0.024-0.04] unit decrease
PlatformAffymetrix, Illumina, Perlegen [2550858] (imputed)
CNVN
Mapped traitbody height
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004339
Study accessionGCST002647