Human SNP ID | rs406936 |
---|---|
Human chromosome | chr6 |
Human SNP position | 31965384 |
Pig chromosome | chr7 |
Pig SNP position | 27758759 |
PubMed ID | 23577725 |
---|---|
Journal | Ann Hum Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23577725 |
Study | Genetic factors in nonsmokers with age-related macular degeneration revealed through genome-wide gene-environment interaction analysis. |
Disease/Trait | Age-related macular degeneration |
Initial sample | 1,207 European ancestry cases, 686 European ancestry controls |
Replication sample | 122 European ancestry cases, 86 European ancestry controls |
Region | 6p21.33 |
Chromosome id | chr6 |
Chromosome position | 31965384 |
Reported gene | SKIV2L |
Mapped gene | SKIV2L |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 6499 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs406936-? |
SNPs | rs406936 |
Merged | 0 |
SNP id current | 406936 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.1 |
P value | 0.0000007 |
Pvalue mlog | 6.15490195998574 |
P value text | |
Or beta | 1.75 |
%95 Ci | [1.41-2.17] |
Platform | Affymetrix [2543887] (imputed) |
CNV | N |
Mapped trait | age-related macular degeneration |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001365 |
Study accession | GCST001986 |