SNP Detail For rs406936
1.Mapping Information
Human SNP ID rs406936
Human chromosome chr6
Human SNP position 31965384
Pig chromosome chr7
Pig SNP position 27758759
2.Annotation Information
PubMed ID23577725
JournalAnn Hum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23577725
StudyGenetic factors in nonsmokers with age-related macular degeneration revealed through genome-wide gene-environment interaction analysis.
Disease/TraitAge-related macular degeneration
Initial sample1,207 European ancestry cases, 686 European ancestry controls
Replication sample122 European ancestry cases, 86 European ancestry controls
Region6p21.33
Chromosome idchr6
Chromosome position31965384
Reported geneSKIV2L
Mapped geneSKIV2L
Upstream gene id
Downstream gene id
SNP gene ids6499
Upstream gene distance
Downstream gene distance
SNP risk allelers406936-?
SNPsrs406936
Merged0
SNP id current406936
Contextintron_variant
Intergenic0
Allele frequency0.1
P value0.0000007
Pvalue mlog6.15490195998574
P value text
Or beta1.75
%95 Ci[1.41-2.17]
PlatformAffymetrix [2543887] (imputed)
CNVN
Mapped traitage-related macular degeneration
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001365
Study accessionGCST001986