Human SNP ID | rs4038131 |
---|---|
Human chromosome | chr2 |
Human SNP position | 17593765 |
Pig chromosome | chr3 |
Pig SNP position | 128394156 |
PubMed ID | 22005930 |
---|---|
Journal | Mol Psychiatry |
Link | www.ncbi.nlm.nih.gov/pubmed/22005930 |
Study | Genome-wide association study of Alzheimer__s disease with psychotic symptoms. |
Disease/Trait | Psychosis and Alzheimer__s disease |
Initial sample | 1,039 European ancestry cases with psychosis, 5,659 European ancestry controls, 260 European, African American and Native American ancestry cases with psychosis from 264 families |
Replication sample | NA |
Region | 2p24.2 |
Chromosome id | chr2 |
Chromosome position | 17593765 |
Reported gene | VSNL1 |
Mapped gene | VSNL1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 7447 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs4038131-? |
SNPs | rs4038131 |
Merged | 0 |
SNP id current | 4038131 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.93 |
P value | 0.0000006 |
Pvalue mlog | 6.22184874961635 |
P value text | |
Or beta | 1.5384616 |
%95 Ci | [NR] |
Platform | Illumina [1847262] (imputed) |
CNV | N |
Mapped trait | Alzheimers disease, psychotic symptoms |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000249, http://www.ebi.ac.uk/efo/EFO_0005940 |
Study accession | GCST001285 |