SNP Detail For rs4038131
1.Mapping Information
Human SNP ID rs4038131
Human chromosome chr2
Human SNP position 17593765
Pig chromosome chr3
Pig SNP position 128394156
2.Annotation Information
PubMed ID22005930
JournalMol Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/22005930
StudyGenome-wide association study of Alzheimer__s disease with psychotic symptoms.
Disease/TraitPsychosis and Alzheimer__s disease
Initial sample1,039 European ancestry cases with psychosis, 5,659 European ancestry controls, 260 European, African American and Native American ancestry cases with psychosis from 264 families
Replication sampleNA
Region2p24.2
Chromosome idchr2
Chromosome position17593765
Reported geneVSNL1
Mapped geneVSNL1
Upstream gene id
Downstream gene id
SNP gene ids7447
Upstream gene distance
Downstream gene distance
SNP risk allelers4038131-?
SNPsrs4038131
Merged0
SNP id current4038131
Contextintron_variant
Intergenic0
Allele frequency0.93
P value0.0000006
Pvalue mlog6.22184874961635
P value text
Or beta1.5384616
%95 Ci[NR]
PlatformIllumina [1847262] (imputed)
CNVN
Mapped traitAlzheimers disease, psychotic symptoms
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000249, http://www.ebi.ac.uk/efo/EFO_0005940
Study accessionGCST001285