SNP Detail For rs40363
1.Mapping Information
Human SNP ID rs40363
Human chromosome chr16
Human SNP position 3459056
Pig chromosome chr3
Pig SNP position 40147856
2.Annotation Information
PubMed ID24057671
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24057671
StudyGenome-wide association study of ancestry-specific TB risk in the South African Coloured population.
Disease/TraitTuberculosis
Initial sample642 South African coloured cases, 91 South African coloured controls
Replication sampleNA
Region16p13.3
Chromosome idchr16
Chromosome position3459056
Reported geneNAA60
Mapped geneNAA60
Upstream gene id
Downstream gene id
SNP gene ids79903
Upstream gene distance
Downstream gene distance
SNP risk allelers40363-G
SNPsrs40363
Merged0
SNP id current40363
Contextintron_variant
Intergenic0
Allele frequency0.72
P value0.000003
Pvalue mlog5.52287874528033
P value text
Or beta11.1111
%95 Ci[NR]
PlatformAffymetrix [up to 4467279] (imputed)
CNVN
Mapped traitTuberculosis
Mapped trait URIhttp://www.orpha.net/ORDO/Orphanet_3389
Study accessionGCST002198