Human SNP ID | rs40363 |
---|---|
Human chromosome | chr16 |
Human SNP position | 3459056 |
Pig chromosome | chr3 |
Pig SNP position | 40147856 |
PubMed ID | 24057671 |
---|---|
Journal | Hum Mol Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/24057671 |
Study | Genome-wide association study of ancestry-specific TB risk in the South African Coloured population. |
Disease/Trait | Tuberculosis |
Initial sample | 642 South African coloured cases, 91 South African coloured controls |
Replication sample | NA |
Region | 16p13.3 |
Chromosome id | chr16 |
Chromosome position | 3459056 |
Reported gene | NAA60 |
Mapped gene | NAA60 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 79903 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs40363-G |
SNPs | rs40363 |
Merged | 0 |
SNP id current | 40363 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.72 |
P value | 0.000003 |
Pvalue mlog | 5.52287874528033 |
P value text | |
Or beta | 11.1111 |
%95 Ci | [NR] |
Platform | Affymetrix [up to 4467279] (imputed) |
CNV | N |
Mapped trait | Tuberculosis |
Mapped trait URI | http://www.orpha.net/ORDO/Orphanet_3389 |
Study accession | GCST002198 |