SNP Detail For rs399885
1.Mapping Information
Human SNP ID rs399885
Human chromosome chr2
Human SNP position 79460126
Pig chromosome chr3
Pig SNP position 67655385
2.Annotation Information
PubMed ID20195266
JournalMol Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/20195266
StudyGenomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs.
Disease/TraitResponse to antipsychotic treatment
Initial sample421 European ancestry, 214 African American, and 103 cases
Replication sampleNA
Region2p12
Chromosome idchr2
Chromosome position79460126
Reported geneintergenic
Mapped geneLOC105374823 - LOC101927987
Upstream gene id105374823
Downstream gene id101927987
SNP gene ids
Upstream gene distance167270
Downstream gene distance33590
SNP risk allelers399885-?
SNPsrs399885
Merged0
SNP id current399885
Contextintron_variant
Intergenic1
Allele frequency0.327
P value0.0000005
Pvalue mlog6.30102999566398
P value text(clozapine-heart rate)
Or beta
%95 Ci
PlatformAffymetrix [492900]
CNVN
Mapped traitresponse to clozapine
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0097338
Study accessionGCST000618