Human SNP ID | rs3987765 |
---|---|
Human chromosome | chr19 |
Human SNP position | 51210487 |
Pig chromosome | chr6 |
Pig SNP position | 51737101 |
PubMed ID | 25786224 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/25786224 |
Study | Novel Genetic Locus Implicated for HIV-1 Acquisition with Putative Regulatory Links to HIV Replication and Infectivity: A Genome-Wide Association Study. |
Disease/Trait | HIV-1 susceptibility |
Initial sample | 628 African American high risk-cases, 1,376 African American high-risk controls, 327 European ancestry high-risk cases, 805 European ancestry high-risk controls |
Replication sample | 1,395 African American high-risk cases, 457 African American high-risk controls, 513 European ancestry high-risk cases, 168 European ancestry high-risk controls |
Region | 19q13.41 |
Chromosome id | chr19 |
Chromosome position | 51210487 |
Reported gene | SIGLEC17P, CD33 |
Mapped gene | LOC105372443 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 105372443 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs3987765-T |
SNPs | rs3987765 |
Merged | 0 |
SNP id current | 3987765 |
Context | upstream_gene_variant |
Intergenic | 0 |
Allele frequency | 0.19 |
P value | 0.000005 |
Pvalue mlog | 5.30102999566398 |
P value text | |
Or beta | 1.35 |
%95 Ci | [1.14-1.61] (AA) |
Platform | Illumina [~ 8000000] (imputed) |
CNV | N |
Mapped trait | HIV-1 infection, Susceptibility to viral and mycobacterial infections |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000180, http://www.orpha.net/ORDO/Orphanet_391311 |
Study accession | GCST002818 |