SNP Detail For rs3987765
1.Mapping Information
Human SNP ID rs3987765
Human chromosome chr19
Human SNP position 51210487
Pig chromosome chr6
Pig SNP position 51737101
2.Annotation Information
PubMed ID25786224
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/25786224
StudyNovel Genetic Locus Implicated for HIV-1 Acquisition with Putative Regulatory Links to HIV Replication and Infectivity: A Genome-Wide Association Study.
Disease/TraitHIV-1 susceptibility
Initial sample628 African American high risk-cases, 1,376 African American high-risk controls, 327 European ancestry high-risk cases, 805 European ancestry high-risk controls
Replication sample1,395 African American high-risk cases, 457 African American high-risk controls, 513 European ancestry high-risk cases, 168 European ancestry high-risk controls
Region19q13.41
Chromosome idchr19
Chromosome position51210487
Reported geneSIGLEC17P, CD33
Mapped geneLOC105372443
Upstream gene id
Downstream gene id
SNP gene ids105372443
Upstream gene distance
Downstream gene distance
SNP risk allelers3987765-T
SNPsrs3987765
Merged0
SNP id current3987765
Contextupstream_gene_variant
Intergenic0
Allele frequency0.19
P value0.000005
Pvalue mlog5.30102999566398
P value text
Or beta1.35
%95 Ci[1.14-1.61] (AA)
PlatformIllumina [~ 8000000] (imputed)
CNVN
Mapped traitHIV-1 infection, Susceptibility to viral and mycobacterial infections
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000180, http://www.orpha.net/ORDO/Orphanet_391311
Study accessionGCST002818