Human SNP ID | rs398652 |
---|---|
Human chromosome | chr14 |
Human SNP position | 56058851 |
Pig chromosome | chr1 |
Pig SNP position | 205907995 |
PubMed ID | 21460395 |
---|---|
Journal | Cancer Prev Res (Phila) |
Link | www.ncbi.nlm.nih.gov/pubmed/21460395 |
Study | A genome-wide association study identifies a locus on chromosome 14q21 as a predictor of leukocyte telomere length and as a marker of susceptibility for bladder cancer. |
Disease/Trait | Telomere length |
Initial sample | 459 individuals |
Replication sample | 1,160 individuals |
Region | 14q22.3 |
Chromosome id | chr14 |
Chromosome position | 56058851 |
Reported gene | PELI2 |
Mapped gene | LOC105370512 - LOC105370513 |
Upstream gene id | 105370512 |
Downstream gene id | 105370513 |
SNP gene ids | |
Upstream gene distance | 12783 |
Downstream gene distance | 36998 |
SNP risk allele | rs398652-? |
SNPs | rs398652 |
Merged | 0 |
SNP id current | 398652 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | |
Or beta | 0.12 |
%95 Ci | [NR] unit increase |
Platform | Illumina [312531] |
CNV | N |
Mapped trait | telomere length |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004505 |
Study accession | GCST001024 |