SNP Detail For rs398652
1.Mapping Information
Human SNP ID rs398652
Human chromosome chr14
Human SNP position 56058851
Pig chromosome chr1
Pig SNP position 205907995
2.Annotation Information
PubMed ID21460395
JournalCancer Prev Res (Phila)
Linkwww.ncbi.nlm.nih.gov/pubmed/21460395
StudyA genome-wide association study identifies a locus on chromosome 14q21 as a predictor of leukocyte telomere length and as a marker of susceptibility for bladder cancer.
Disease/TraitTelomere length
Initial sample459 individuals
Replication sample1,160 individuals
Region14q22.3
Chromosome idchr14
Chromosome position56058851
Reported genePELI2
Mapped geneLOC105370512 - LOC105370513
Upstream gene id105370512
Downstream gene id105370513
SNP gene ids
Upstream gene distance12783
Downstream gene distance36998
SNP risk allelers398652-?
SNPsrs398652
Merged0
SNP id current398652
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta0.12
%95 Ci[NR] unit increase
PlatformIllumina [312531]
CNVN
Mapped traittelomere length
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004505
Study accessionGCST001024