Human SNP ID | rs397020 |
---|---|
Human chromosome | chr20 |
Human SNP position | 1225242 |
Pig chromosome | chr17 |
Pig SNP position | 38611589 |
PubMed ID | 19010793 |
---|---|
Journal | Hum Mol Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/19010793 |
Study | Genome-wide association analysis of susceptibility and clinical phenotype in multiple sclerosis. |
Disease/Trait | Multiple sclerosis |
Initial sample | 978 European ancestry cases, 883 European ancestry controls |
Replication sample | NA |
Region | 20p13 |
Chromosome id | chr20 |
Chromosome position | 1225242 |
Reported gene | C20orf46 |
Mapped gene | C20orf202 - RAD21L1 |
Upstream gene id | 400831 |
Downstream gene id | 642636 |
SNP gene ids | |
Upstream gene distance | 16968 |
Downstream gene distance | 801 |
SNP risk allele | rs397020-? |
SNPs | rs397020 |
Merged | 0 |
SNP id current | 397020 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.52 |
P value | 0.0000008 |
Pvalue mlog | 6.09691001300805 |
P value text | |
Or beta | 1.41 |
%95 Ci | [NR] |
Platform | Illumina [551642] |
CNV | N |
Mapped trait | multiple sclerosis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003885 |
Study accession | GCST000269 |