SNP Detail For rs397020
1.Mapping Information
Human SNP ID rs397020
Human chromosome chr20
Human SNP position 1225242
Pig chromosome chr17
Pig SNP position 38611589
2.Annotation Information
PubMed ID19010793
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/19010793
StudyGenome-wide association analysis of susceptibility and clinical phenotype in multiple sclerosis.
Disease/TraitMultiple sclerosis
Initial sample978 European ancestry cases, 883 European ancestry controls
Replication sampleNA
Region20p13
Chromosome idchr20
Chromosome position1225242
Reported geneC20orf46
Mapped geneC20orf202 - RAD21L1
Upstream gene id400831
Downstream gene id642636
SNP gene ids
Upstream gene distance16968
Downstream gene distance801
SNP risk allelers397020-?
SNPsrs397020
Merged0
SNP id current397020
Contextupstream_gene_variant
Intergenic1
Allele frequency0.52
P value0.0000008
Pvalue mlog6.09691001300805
P value text
Or beta1.41
%95 Ci[NR]
PlatformIllumina [551642]
CNVN
Mapped traitmultiple sclerosis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003885
Study accessionGCST000269