SNP Detail For rs394819
1.Mapping Information
Human SNP ID rs394819
Human chromosome chr19
Human SNP position 44901322
Pig chromosome chr6
Pig SNP position 47265229
2.Annotation Information
PubMed ID26339675
JournalAnn Clin Transl Neurol
Linkwww.ncbi.nlm.nih.gov/pubmed/26339675
StudyF-box/LRR-repeat protein 7 is genetically associated with Alzheimer__s disease.
Disease/TraitAlzheimer__s disease (late onset)
Initial sample2,451 Caribbean Hispanic cases, 2,063 Caribbean Hispanic controls
Replication sample550 Caribbean Hispanic cases, 236 Caribbean Hispanic controls
Region19q13.32
Chromosome idchr19
Chromosome position44901322
Reported geneTOMM40, APOE
Mapped geneTOMM40
Upstream gene id
Downstream gene id
SNP gene ids10452
Upstream gene distance
Downstream gene distance
SNP risk allelers394819-T
SNPsrs394819
Merged
SNP id current394819
Contextmissense_variant
Intergenic0
Allele frequency0.07
P value0.00000000008
Pvalue mlog10.096910013008
P value text
Or beta1.89
%95 Ci[1.55-2.3]
PlatformAffymetrix, Illumina [8837542] (imputed)
CNVN
Mapped traitAlzheimers disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000249
Study accessionGCST002983