Human SNP ID | rs3942852 |
---|---|
Human chromosome | chr11 |
Human SNP position | 48093537 |
Pig chromosome | chr2 |
Pig SNP position | 15709456 |
PubMed ID | 22076464 |
---|---|
Journal | Leukemia |
Link | www.ncbi.nlm.nih.gov/pubmed/22076464 |
Study | Identification of germline susceptibility loci in ETV6-RUNX1-rearranged childhood acute lymphoblastic leukemia. |
Disease/Trait | Acute lymphoblastic leukemia (childhood) |
Initial sample | 419 European ancestry ETV6-RUNX1 positive cases, 474 European ancestry controls |
Replication sample | 951 European ancestry ETV6-RUNX1 positive cases, 326 European ancestry ETV6-RUNX1 negative cases, 3,061 European ancestry controls |
Region | 11p11.2 |
Chromosome id | chr11 |
Chromosome position | 48093537 |
Reported gene | PTPRJ |
Mapped gene | PTPRJ |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 5795 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs3942852-C |
SNPs | rs3942852 |
Merged | 0 |
SNP id current | 3942852 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.22 |
P value | 0.0000005 |
Pvalue mlog | 6.30102999566398 |
P value text | (ETV6-RUNX1 positive, Northern European) |
Or beta | |
%95 Ci | |
Platform | Affymetrix [355750] |
CNV | N |
Mapped trait | acute lymphoblastic leukemia |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000220 |
Study accession | GCST001320 |
PubMed ID | 22076464 |
Journal | Leukemia |
Link | www.ncbi.nlm.nih.gov/pubmed/22076464 |
Study | Identification of germline susceptibility loci in ETV6-RUNX1-rearranged childhood acute lymphoblastic leukemia. |
Disease/Trait | Acute lymphoblastic leukemia (childhood) |
Initial sample | 419 European ancestry ETV6-RUNX1 positive cases, 474 European ancestry controls |
Replication sample | 951 European ancestry ETV6-RUNX1 positive cases, 326 European ancestry ETV6-RUNX1 negative cases, 3,061 European ancestry controls |
Region | 11p11.2 |
Chromosome id | chr11 |
Chromosome position | 48093537 |
Reported gene | PTPRJ |
Mapped gene | PTPRJ |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 5795 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs3942852-T |
SNPs | rs3942852 |
Merged | 0 |
SNP id current | 3942852 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.78 |
P value | 0.000001 |
Pvalue mlog | 6 |
P value text | (ETV6-RUNX1 positive) |
Or beta | 1.2987013 |
%95 Ci | [1.12-1.47] |
Platform | Affymetrix [355750] |
CNV | N |
Mapped trait | acute lymphoblastic leukemia |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000220 |
Study accession | GCST001320 |