Human SNP ID | rs3936510 |
---|---|
Human chromosome | chr5 |
Human SNP position | 56565039 |
Pig chromosome | chr16 |
Pig SNP position | 37893486 |
PubMed ID | 25673412 |
---|---|
Journal | Nature |
Link | www.ncbi.nlm.nih.gov/pubmed/25673412 |
Study | New genetic loci link adipose and insulin biology to body fat distribution. |
Disease/Trait | Waist-to-hip ratio adjusted for body mass index |
Initial sample | up to 56,910 European ancestry men, up to 86,570 European ancestry women |
Replication sample | up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African-American/Afro-Caribbean ancestry men, 6,258 African-American/Afro-Caribbean ancestry women, 2,285 South Asian ancestr |
Region | 5q11.2 |
Chromosome id | chr5 |
Chromosome position | 56565039 |
Reported gene | MAP3K1 |
Mapped gene | LOC101928448 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 101928448 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs3936510-T |
SNPs | rs3936510 |
Merged | 0 |
SNP id current | 3936510 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.1865 |
P value | 0.000000000006 |
Pvalue mlog | 11.2218487496163 |
P value text | (EA, women) |
Or beta | 0.0416 |
%95 Ci | [0.03-0.053] unit increase |
Platform | Affymetrix, Illumina, Perlegen [up to 2542447] (imputed) |
CNV | N |
Mapped trait | waist-hip ratio, body mass index |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004343, http://www.ebi.ac.uk/efo/EFO_0004340 |
Study accession | GCST002782 |
PubMed ID | 25673412 |
Journal | Nature |
Link | www.ncbi.nlm.nih.gov/pubmed/25673412 |
Study | New genetic loci link adipose and insulin biology to body fat distribution. |
Disease/Trait | Waist-to-hip ratio adjusted for body mass index |
Initial sample | up to 56,910 European ancestry men, up to 86,570 European ancestry women |
Replication sample | up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African-American/Afro-Caribbean ancestry men, 6,258 African-American/Afro-Caribbean ancestry women, 2,285 South Asian ancestr |
Region | 5q11.2 |
Chromosome id | chr5 |
Chromosome position | 56565039 |
Reported gene | MAP3K1 |
Mapped gene | LOC101928448 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 101928448 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs3936510-T |
SNPs | rs3936510 |
Merged | 0 |
SNP id current | 3936510 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.1845 |
P value | 0.000000009 |
Pvalue mlog | 8.04575749056067 |
P value text | (EA) |
Or beta | 0.0262 |
%95 Ci | [0.017-0.035] unit increase |
Platform | Affymetrix, Illumina, Perlegen [up to 2542447] (imputed) |
CNV | N |
Mapped trait | waist-hip ratio, body mass index |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004343, http://www.ebi.ac.uk/efo/EFO_0004340 |
Study accession | GCST002782 |
PubMed ID | 25673412 |
Journal | Nature |
Link | www.ncbi.nlm.nih.gov/pubmed/25673412 |
Study | New genetic loci link adipose and insulin biology to body fat distribution. |
Disease/Trait | Waist-to-hip ratio adjusted for body mass index |
Initial sample | up to 56,910 European ancestry men, up to 86,570 European ancestry women |
Replication sample | up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African-American/Afro-Caribbean ancestry men, 6,258 African-American/Afro-Caribbean ancestry women, 2,285 South Asian ancestr |
Region | 5q11.2 |
Chromosome id | chr5 |
Chromosome position | 56565039 |
Reported gene | MAP3K1 |
Mapped gene | LOC101928448 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 101928448 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs3936510-T |
SNPs | rs3936510 |
Merged | 0 |
SNP id current | 3936510 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.1884 |
P value | 0.000000000008 |
Pvalue mlog | 11.096910013008 |
P value text | (women) |
Or beta | 0.0401 |
%95 Ci | [0.029-0.052] unit increase |
Platform | Affymetrix, Illumina, Perlegen [up to 2542447] (imputed) |
CNV | N |
Mapped trait | waist-hip ratio, body mass index |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004343, http://www.ebi.ac.uk/efo/EFO_0004340 |
Study accession | GCST002782 |
PubMed ID | 25673412 |
Journal | Nature |
Link | www.ncbi.nlm.nih.gov/pubmed/25673412 |
Study | New genetic loci link adipose and insulin biology to body fat distribution. |
Disease/Trait | Waist-to-hip ratio adjusted for body mass index |
Initial sample | up to 56,910 European ancestry men, up to 86,570 European ancestry women |
Replication sample | up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African-American/Afro-Caribbean ancestry men, 6,258 African-American/Afro-Caribbean ancestry women, 2,285 South Asian ancestr |
Region | 5q11.2 |
Chromosome id | chr5 |
Chromosome position | 56565039 |
Reported gene | MAP3K1 |
Mapped gene | LOC101928448 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 101928448 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs3936510-T |
SNPs | rs3936510 |
Merged | 0 |
SNP id current | 3936510 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.1862 |
P value | 0.00000002 |
Pvalue mlog | 7.69897000433601 |
P value text | |
Or beta | 0.0246 |
%95 Ci | [0.016-0.033] unit increase |
Platform | Affymetrix, Illumina, Perlegen [up to 2542447] (imputed) |
CNV | N |
Mapped trait | waist-hip ratio, body mass index |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004343, http://www.ebi.ac.uk/efo/EFO_0004340 |
Study accession | GCST002782 |