Human SNP ID | rs3930234 |
---|---|
Human chromosome | chr3 |
Human SNP position | 184498342 |
Pig chromosome | chr13 |
Pig SNP position | 131878937 |
PubMed ID | 21529783 |
---|---|
Journal | Biol Psychiatry |
Link | www.ncbi.nlm.nih.gov/pubmed/21529783 |
Study | A quantitative-trait genome-wide association study of alcoholism risk in the community: findings and implications. |
Disease/Trait | Alcoholism (alcohol use disorder factor score) |
Initial sample | 2,062 European ancestry alcohol dependence cases, 6,692 European ancestry controls |
Replication sample | 3,393 European ancestry individuals |
Region | 3q27.1 |
Chromosome id | chr3 |
Chromosome position | 184498342 |
Reported gene | intergenic |
Mapped gene | LOC105374252 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 105374252 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs3930234-C |
SNPs | rs3930234 |
Merged | 0 |
SNP id current | 3930234 |
Context | downstream_gene_variant |
Intergenic | 0 |
Allele frequency | 0.15 |
P value | 0.000008 |
Pvalue mlog | 5.09691001300805 |
P value text | |
Or beta | 0.104 |
%95 Ci | [NR] unit increase |
Platform | Illumina [~ 300000] |
CNV | N |
Mapped trait | alcohol dependence |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003829 |
Study accession | GCST001053 |