SNP Detail For rs3924223
1.Mapping Information
Human SNP ID rs3924223
Human chromosome chr1
Human SNP position 221905852
Pig chromosome chr10
Pig SNP position 13153351
2.Annotation Information
PubMed ID26634245
JournalBMC Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26634245
StudyA genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.
Disease/TraitPost bronchodilator FEV1/FVC ratio in COPD
Initial sample5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases
Replication sampleNA
Region1q41
Chromosome idchr1
Chromosome position221905852
Reported geneIntergenic
Mapped geneLOC105372950
Upstream gene id
Downstream gene id
SNP gene ids105372950
Upstream gene distance
Downstream gene distance
SNP risk allelers3924223-A
SNPsrs3924223
Merged0
SNP id current3924223
Contextintron_variant
Intergenic0
Allele frequency0.543
P value0.000001
Pvalue mlog6
P value text
Or beta0.012
%95 CiNR unit increase
PlatformIllumina [NR] (imputed)
CNVN
Mapped traitresponse to bronchodilator, chronic obstructive pulmonary disease, FEV/FEC ratio
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0097366, http://www.ebi.ac.uk/efo/EFO_0000341, http://www.ebi.ac.uk/efo/EFO_0004713
Study accessionGCST003265