Human SNP ID | rs3922844 |
---|---|
Human chromosome | chr3 |
Human SNP position | 38582762 |
Pig chromosome | chr13 |
Pig SNP position | 25558804 |
PubMed ID | 21347284 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21347284 |
Study | Genome-wide association studies of the PR interval in African Americans. |
Disease/Trait | PR interval |
Initial sample | 6,247 African American individuals |
Replication sample | 2,022 African American individuals |
Region | 3p22.2 |
Chromosome id | chr3 |
Chromosome position | 38582762 |
Reported gene | SCN5A |
Mapped gene | SCN5A |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 6331 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs3922844-C |
SNPs | rs3922844 |
Merged | 0 |
SNP id current | 3922844 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.41 |
P value | 3E-23 |
Pvalue mlog | 22.5228787452803 |
P value text | |
Or beta | 5.11 |
%95 Ci | [4.11-6.11] unit increase |
Platform | Affymetrix [2147483647] (imputed) |
CNV | N |
Mapped trait | PR interval |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004462 |
Study accession | GCST000971 |
PubMed ID | 23139255 |
Journal | Circ Cardiovasc Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23139255 |
Study | Novel loci associated with PR interval in a genome-wide association study of 10 African American cohorts. |
Disease/Trait | PR interval |
Initial sample | 13,415 African American individuals |
Replication sample | NA |
Region | 3p22.2 |
Chromosome id | chr3 |
Chromosome position | 38582762 |
Reported gene | SCN5A |
Mapped gene | SCN5A |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 6331 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs3922844-T |
SNPs | rs3922844 |
Merged | 0 |
SNP id current | 3922844 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.58 |
P value | 5E-43 |
Pvalue mlog | 42.3010299956639 |
P value text | |
Or beta | 4.54 |
%95 Ci | [3.89-5.19] unit decrease |
Platform | Affymetrix, Illumina [2845108] (imputed) |
CNV | N |
Mapped trait | PR interval |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004462 |
Study accession | GCST001735 |