SNP Detail For rs3922844
1.Mapping Information
Human SNP ID rs3922844
Human chromosome chr3
Human SNP position 38582762
Pig chromosome chr13
Pig SNP position 25558804
2.Annotation Information
PubMed ID21347284
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21347284
StudyGenome-wide association studies of the PR interval in African Americans.
Disease/TraitPR interval
Initial sample6,247 African American individuals
Replication sample2,022 African American individuals
Region3p22.2
Chromosome idchr3
Chromosome position38582762
Reported geneSCN5A
Mapped geneSCN5A
Upstream gene id
Downstream gene id
SNP gene ids6331
Upstream gene distance
Downstream gene distance
SNP risk allelers3922844-C
SNPsrs3922844
Merged0
SNP id current3922844
Contextintron_variant
Intergenic0
Allele frequency0.41
P value3E-23
Pvalue mlog22.5228787452803
P value text
Or beta5.11
%95 Ci[4.11-6.11] unit increase
PlatformAffymetrix [2147483647] (imputed)
CNVN
Mapped traitPR interval
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004462
Study accessionGCST000971
PubMed ID23139255
JournalCirc Cardiovasc Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23139255
StudyNovel loci associated with PR interval in a genome-wide association study of 10 African American cohorts.
Disease/TraitPR interval
Initial sample13,415 African American individuals
Replication sampleNA
Region3p22.2
Chromosome idchr3
Chromosome position38582762
Reported geneSCN5A
Mapped geneSCN5A
Upstream gene id
Downstream gene id
SNP gene ids6331
Upstream gene distance
Downstream gene distance
SNP risk allelers3922844-T
SNPsrs3922844
Merged0
SNP id current3922844
Contextintron_variant
Intergenic0
Allele frequency0.58
P value5E-43
Pvalue mlog42.3010299956639
P value text
Or beta4.54
%95 Ci[3.89-5.19] unit decrease
PlatformAffymetrix, Illumina [2845108] (imputed)
CNVN
Mapped traitPR interval
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004462
Study accessionGCST001735